Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1393
(600 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 25 0.57
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 25 0.57
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 23 2.3
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 23 2.3
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 3.0
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 22 4.0
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 22 4.0
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 22 4.0
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 4.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 5.3
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 21 7.0
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 21 7.0
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 25.0 bits (52), Expect = 0.57
Identities = 5/16 (31%), Positives = 12/16 (75%)
Frame = -2
Query: 302 CSWMLYISYRNSSRWR 255
C W++Y++Y+ +W+
Sbjct: 486 CYWVIYVTYQEEFKWQ 501
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 25.0 bits (52), Expect = 0.57
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 453 TMISVQLTSHPSSRDNSTENLXHLTSPPQHQTV*NK-LSGA 572
T + T+ ++ N+T+N T PPQ V +K LSGA
Sbjct: 664 TTTTTTTTTTTTTTPNTTQNASATTPPPQVDEVDDKELSGA 704
Score = 23.8 bits (49), Expect = 1.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 462 SVQLTSHPSSRDNSTENLXHLTSPP 536
+V L+ PS R + + LTSPP
Sbjct: 1374 TVDLSPSPSDRGRNDDGSDRLTSPP 1398
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 23.0 bits (47), Expect = 2.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 362 NLCPRASHSFSTMIRNPS 415
NL P A S+ST +R+P+
Sbjct: 402 NLIPSALQSYSTSMRDPA 419
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 23.0 bits (47), Expect = 2.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 362 NLCPRASHSFSTMIRNPS 415
NL P A S+ST +R+P+
Sbjct: 402 NLIPSALQSYSTSMRDPA 419
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.6 bits (46), Expect = 3.0
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -3
Query: 361 PAAV*HRSHTATRLHTHIPHVLGCCTSATETV 266
P + R HTA + PH C T ++T+
Sbjct: 1067 PMSEERRQHTAEGVPEQPPHDTTCTTLTSQTI 1098
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 22.2 bits (45), Expect = 4.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 218 VRDEPQVVLVELDASGNCFCS*CTASKNMRN 310
+++ V++V ++ SGN T+S ++RN
Sbjct: 189 IKEHDTVLVVNIEKSGNESKKYATSSNSLRN 219
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 22.2 bits (45), Expect = 4.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 218 VRDEPQVVLVELDASGNCFCS*CTASKNMRN 310
+++ V++V ++ SGN T+S ++RN
Sbjct: 194 IKEHDTVLVVNIEKSGNESKKYATSSNSLRN 224
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 22.2 bits (45), Expect = 4.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 218 VRDEPQVVLVELDASGNCFCS*CTASKNMRN 310
+++ V++V ++ SGN T+S ++RN
Sbjct: 189 IKEHDTVLVVNIEKSGNESKKYATSSNSLRN 219
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 22.2 bits (45), Expect = 4.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 367 VPEGQPLLLDDDPEPFQRPVVGLQAD 444
VP+ + D DP+P P V Q++
Sbjct: 560 VPQQGASIDDSDPDPSSEPTVHSQSE 585
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 5.3
Identities = 11/35 (31%), Positives = 13/35 (37%)
Frame = -3
Query: 406 PDHRREGVAGPRAQVPAAV*HRSHTATRLHTHIPH 302
P H A P Q + H S+ A H PH
Sbjct: 430 PHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPH 464
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 21.4 bits (43), Expect = 7.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 218 VRDEPQVVLVELDASGNCFCS*CTASKNMRN 310
+ + V++V ++ SGN T+S ++RN
Sbjct: 189 IEEHDTVLVVNIEKSGNESKKYATSSNSLRN 219
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 21.4 bits (43), Expect = 7.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 367 VPEGQPLLLDDDPEPFQRPVVGLQA 441
VP+ + D DP+P P V Q+
Sbjct: 112 VPQQGASIDDSDPDPSSEPTVHSQS 136
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,395
Number of Sequences: 438
Number of extensions: 2812
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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