Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1393
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04540.1 68418.m00454 expressed protein 57 1e-08
At3g10550.1 68416.m01266 expressed protein 56 1e-08
At2g34357.1 68415.m04206 expressed protein 32 0.33
At1g47560.1 68414.m05279 expressed protein 32 0.33
At3g59390.2 68416.m06624 expressed protein protein CG15643 - Dro... 31 0.44
At3g59390.1 68416.m06623 expressed protein protein CG15643 - Dro... 31 0.44
At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi... 31 0.58
At1g47550.1 68414.m05278 expressed protein 31 0.58
At1g03340.1 68414.m00313 expressed protein similar to hypothetic... 29 1.8
At5g42960.1 68418.m05239 expressed protein 29 3.1
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha... 29 3.1
At4g12710.1 68417.m01995 armadillo/beta-catenin repeat family pr... 29 3.1
At5g45113.1 68418.m05537 mitochondrial transcription termination... 28 5.4
At2g30470.1 68415.m03711 transcriptional factor B3 family protei... 28 5.4
>At5g04540.1 68418.m00454 expressed protein
Length = 833
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = -1
Query: 486 TDGMS-TAQISSLAQICLEPYYRTLEGFRIIVEKEWLALGHKFQQRCNIGATPQQG 322
+DG T Q+ SLA + L+PYYRT GF+ +VEK+WL+ GH F R + + G
Sbjct: 441 SDGWDRTTQLVSLACLLLDPYYRTFSGFQALVEKDWLSFGHPFSDRVGMPNVSESG 496
>At3g10550.1 68416.m01266 expressed protein
Length = 634
Score = 56.4 bits (130), Expect = 1e-08
Identities = 25/46 (54%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = -1
Query: 486 TDGMS-TAQISSLAQICLEPYYRTLEGFRIIVEKEWLALGHKFQQR 352
+DG T Q+ SLA + L+PYYRT GF+ +VEK+WLA GH F R
Sbjct: 238 SDGWDRTTQLVSLACLLLDPYYRTFAGFQALVEKDWLAFGHPFSDR 283
>At2g34357.1 68415.m04206 expressed protein
Length = 1280
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 434 SRQI*ANDDICAVDIPSVFQGQQHREPXTSNKST-TAPDSLKQIVWSC 574
+R N D+C V +PSVF G ++ A D+LK +++SC
Sbjct: 325 TRSFTLNRDLCVVKLPSVFNGLNDIIASEHEEAIFAATDALKSLIFSC 372
>At1g47560.1 68414.m05279 expressed protein
Length = 887
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +2
Query: 122 VGALVVGRGDAELRALRLAVQXEGPEAAG-HAVVRDEPQV--VLVELDASGN 268
+G V+G G+AE + RL + + EAA HA++ EP V VL L+A+ N
Sbjct: 214 LGTYVIGIGEAEAFSERLKRELQALEAANVHAILESEPLVDEVLNGLEAATN 265
>At3g59390.2 68416.m06624 expressed protein protein CG15643 -
Drosophila melanogaster, EMBL:AE003499
Length = 273
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 543 GAVVDLLDVQGSLCCCPWKTDGMSTAQISSLAQIC 439
G V D L ++ CCPWK + S + L+Q C
Sbjct: 55 GNVCDALSLESRTRCCPWKGERFSCHGCNILSQCC 89
>At3g59390.1 68416.m06623 expressed protein protein CG15643 -
Drosophila melanogaster, EMBL:AE003499
Length = 273
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 543 GAVVDLLDVQGSLCCCPWKTDGMSTAQISSLAQIC 439
G V D L ++ CCPWK + S + L+Q C
Sbjct: 55 GNVCDALSLESRTRCCPWKGERFSCHGCNILSQCC 89
>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 500
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 332 RNKASHPHSSCSWMLYIS-YRNSSRWRRVQRVLPAVRRVPQRVLPL 198
R + PH+S ++M+ I+ Y N +RW V+R+ +R RV L
Sbjct: 322 RLQVLEPHNSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDL 367
>At1g47550.1 68414.m05278 expressed protein
Length = 887
Score = 31.1 bits (67), Expect = 0.58
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +2
Query: 122 VGALVVGRGDAELRALRLAVQXEGPEAAG-HAVVRDEPQV--VLVELDASGN 268
+G V+G G+AE + RL + + EAA HA++ EP V VL L+A+ N
Sbjct: 214 LGTYVMGIGEAEAFSERLKRELQALEAANVHAILESEPLVDEVLNGLEAATN 265
>At1g03340.1 68414.m00313 expressed protein similar to hypothetical
protein GB:AAC79114
Length = 385
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = -2
Query: 275 RNSSRWRRVQRVLPAVRR----VPQRVLPLPD 192
RNS+RWR++ R++P +R VP L LP+
Sbjct: 182 RNSTRWRKLSRLVPQFQRFDSEVPIDTLQLPE 213
>At5g42960.1 68418.m05239 expressed protein
Length = 213
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 119 GVGALVVGRGDAELRA-LRLAVQXEGPEAAGHAVVRDEPQVVLVE 250
G+G+L GD +LRA + A GP G A+ ++P +VE
Sbjct: 18 GIGSLAFNAGDIKLRATMTDATLVAGPTLTGLALAVEKPGSFIVE 62
>At4g36080.1 68417.m05136 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF00454: Phosphatidylinositol 3-
and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
Length = 3839
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 514 RFSVLLSLEDGWDVNCTDIIVSSDLPGALLQDAGRVPDH 398
RF VLL LED V +V ++PG D PDH
Sbjct: 3421 RFPVLLRLEDESKVLRDFNVVDVEIPGQYFADQEVAPDH 3459
>At4g12710.1 68417.m01995 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 402
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 280 LMYSIQEHEECGCEALLRCGSDVTPLLELVPEGQPLLLD 396
L+ I H E G A+ C + L+E V +G PL ++
Sbjct: 239 LVEMILSHSEDGRNAITSCEDGILTLVETVEDGSPLSIE 277
>At5g45113.1 68418.m05537 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 414
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 329 NKASHPHSSCSWML-YISYRNSSRWRRVQRVLPAVRRV 219
NK + C W+ Y+S R + WRR+ + + +V
Sbjct: 77 NKLKGLNLGCDWLARYLSVRKTYNWRRILETMELLEKV 114
>At2g30470.1 68415.m03711 transcriptional factor B3 family protein
low similarity to FUSCA3 [Arabidopsis thaliana]
GI:3582518; contains Pfam profile PF02362: B3 DNA
binding domain
Length = 790
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -3
Query: 313 HIPHVLGCCTSATETVPAGVEFNEYYLRFVAYHSVSCRFRTFXLDSEAQRAELGITAADD 134
H H GC P+G ++ +V RF+T + + ++ E +TAA+D
Sbjct: 644 HPRHRAGCSCIVCIQPPSGKGRHKPTCGCTVCSTVKRRFKTLMMRRKKKQLERDVTAAED 703
Query: 133 KR 128
K+
Sbjct: 704 KK 705
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,039,748
Number of Sequences: 28952
Number of extensions: 214938
Number of successful extensions: 681
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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