Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1392
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    98   3e-22
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    92   2e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    49   2e-07
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    39   2e-04
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   1.6  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    26   1.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   2.1  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    24   5.0  
SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   5.0  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    24   6.6  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    23   8.7  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    23   8.7  
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    23   8.7  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    23   8.7  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    23   8.7  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    23   8.7  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 98.3 bits (234), Expect = 3e-22
 Identities = 46/81 (56%), Positives = 51/81 (62%)
 Frame = +3

Query: 78  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
           MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M  +      D  F+TFFSETG G 
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
             P             +VRTG
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTG 81


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 92.3 bits (219), Expect = 2e-20
 Identities = 50/86 (58%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
 Frame = +3

Query: 78  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 242
           MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG  PT+     K     +D F TFFSE
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59

Query: 243 TGAGSTYPVXXXXXXXXXXXMKVRTG 320
           TG G   P             +VRTG
Sbjct: 60  TGQGKFVPRSIYVDLEPNVIDQVRTG 85


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 48.8 bits (111), Expect = 2e-07
 Identities = 24/55 (43%), Positives = 33/55 (60%)
 Frame = +3

Query: 81  RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSET 245
           RE I++  GQ G QIG+  W+  CLEHGI PDG + +  T   G D  + FF ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55



 Score = 26.6 bits (56), Expect = 0.93
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 230 FLQRDRSWQHVPRAVFVDLEPTXVD 304
           F Q D + +++PRA+ +DLEP  V+
Sbjct: 52  FYQSDDT-RYIPRAILIDLEPRVVN 75


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 38.7 bits (86), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +3

Query: 78  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
           MRE + +  GQ G Q+G A W     EHG+   G      T     +  N +F+E   G 
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58

Query: 258 TYP 266
             P
Sbjct: 59  YVP 61



 Score = 27.1 bits (57), Expect = 0.70
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 254 QHVPRAVFVDLEPTXVD 304
           ++VPRAV VDLEP  +D
Sbjct: 58  KYVPRAVLVDLEPGTMD 74


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 176 WPDAHRQDHRGWRRFFQHFLQR 241
           W  A R D R  R  FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 280 DEDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIWPSG 170
           ++D T Y+ P P+   + L +++PP +V+ +G  P G
Sbjct: 834 EKDLTKYLGP-PIYTSQRLYDTTPPGVVMGLGWTPMG 869


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 157 STXSSLMARCPQTRPSGVETILSTLSSARP 246
           ST SSL +    ++PS   T  ST SSA P
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = +2

Query: 176 WPDAHRQDHRGWRRFFQHFLQRDRSWQHV 262
           W   H+     W++ F       RSW H+
Sbjct: 454 WERFHKLSEVDWKKAFYKTFYESRSWFHL 482


>SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 128

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -1

Query: 262 YVLPAPVSLKKVLKESSPPPMVLS 191
           ++ P+ VSLK++L+ + P P+ L+
Sbjct: 3   FLKPSKVSLKRILQGNPPKPIGLT 26


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 218 IVSTPDGLVCGHLAIRLDXVLQAVKLPAGITD 123
           I +T DG+V   LA +LD ++Q     AG TD
Sbjct: 697 IQATNDGMVVEDLASKLDHIVQL----AGFTD 724


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 188 HRQDHRGWRRFFQHFLQRDRSWQHVPR 268
           +R    GW+   +H L  +++++ VPR
Sbjct: 260 YRTTKSGWQNSIRHNLSLNKAFRKVPR 286


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 138 WELYCLEHGIQPDGQMPTDKTI 203
           WELYC E G     +M   KTI
Sbjct: 289 WELYCQEAGGIIGDEMGLGKTI 310


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -3

Query: 185 HLAIRLDXVLQAVKLPAGITDLDSGLANVNRDALTHFDLSFFLCLNVELNYN 30
           ++ IRLD     ++LP      D+ L N+N   +T    +  LC +++L+ N
Sbjct: 117 YIPIRLD-----IELPNNYRLKDTFLWNMNEQVMTPDVFAQILCADLDLSTN 163


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -1

Query: 286 KIDEDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIW 179
           KID    GY      S K  + E +  P  +  G+W
Sbjct: 227 KIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -1

Query: 271 STGYVLPAPVSLKKVLKESSPPPMVLSVGIWPSGWXPCSRQ*SSQQALP 125
           + G +LP+PVSL + +  S     +  +G  P       ++ +++  LP
Sbjct: 219 TAGVLLPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKKETAKYHLP 267


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 184 CPQTRPSGVETILSTLSSARPE 249
           CP T  +G  ++  T++++RPE
Sbjct: 536 CPPTWNTGPNSLQQTIANSRPE 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,255,660
Number of Sequences: 5004
Number of extensions: 23053
Number of successful extensions: 87
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)