Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1392
(322 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 124 1e-29
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 124 1e-29
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 124 1e-29
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 122 6e-29
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 105 5e-24
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 105 5e-24
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 105 9e-24
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 105 9e-24
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 103 2e-23
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 103 2e-23
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 102 5e-23
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 102 5e-23
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 93 3e-20
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 90 4e-19
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 73 4e-14
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 50 5e-07
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 49 9e-07
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 49 9e-07
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 48 1e-06
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 47 3e-06
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 47 3e-06
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 44 2e-05
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 43 6e-05
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 43 6e-05
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 35 0.015
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 35 0.015
U53181-11|AAM29689.1| 315|Caenorhabditis elegans Hypothetical p... 27 4.0
U53181-10|AAA93489.2| 334|Caenorhabditis elegans Hypothetical p... 27 4.0
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 26 5.3
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 26 5.3
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 26 5.3
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 26 7.0
U41010-3|AAF98587.1| 655|Caenorhabditis elegans Hypothetical pr... 26 7.0
AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical ... 26 7.0
AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear recep... 26 7.0
AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear recep... 26 7.0
AC090999-24|AAK26151.1| 502|Caenorhabditis elegans Hypothetical... 26 7.0
Z82268-7|CAB05196.2| 138|Caenorhabditis elegans Hypothetical pr... 25 9.2
AF026212-1|AAF99971.1| 807|Caenorhabditis elegans Hypothetical ... 25 9.2
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 124 bits (299), Expect = 1e-29
Identities = 54/81 (66%), Positives = 63/81 (77%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P ++RTG
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTG 81
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 124 bits (299), Expect = 1e-29
Identities = 54/81 (66%), Positives = 63/81 (77%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P ++RTG
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTG 81
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 124 bits (299), Expect = 1e-29
Identities = 54/81 (66%), Positives = 63/81 (77%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P ++RTG
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTG 81
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 122 bits (294), Expect = 6e-29
Identities = 53/80 (66%), Positives = 62/80 (77%)
Frame = +3
Query: 81 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGST 260
RE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGRH 60
Query: 261 YPVXXXXXXXXXXXMKVRTG 320
P ++RTG
Sbjct: 61 VPRAVMVDLEPTVIDEIRTG 80
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 105 bits (253), Expect = 5e-24
Identities = 48/81 (59%), Positives = 55/81 (67%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE +S+H+GQAGVQIGNACWELYCLEHGI PDG MP D + G D S+NTFFSET +G
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQSYNTFFSETPSGK 60
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P +VRTG
Sbjct: 61 HVPRAIFVDLEPTVIDEVRTG 81
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 105 bits (253), Expect = 5e-24
Identities = 48/82 (58%), Positives = 57/82 (69%)
Frame = +3
Query: 75 KMRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAG 254
+ RE IS+HVGQAGVQ+GNACWELYCLEHGIQPDG + + ++G DDSFNTFFSET AG
Sbjct: 5 RSREVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDSFNTFFSETMAG 64
Query: 255 STYPVXXXXXXXXXXXMKVRTG 320
P ++RTG
Sbjct: 65 KHVPRAIMVDLEPTPIDEIRTG 86
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 105 bits (251), Expect = 9e-24
Identities = 50/81 (61%), Positives = 56/81 (69%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MPT T G +SF TFFS+TG+G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGR 58
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P ++RTG
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTG 79
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 105 bits (251), Expect = 9e-24
Identities = 50/81 (61%), Positives = 56/81 (69%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MPT T G +SF TFFS+TG+G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGR 58
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P ++RTG
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTG 79
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 103 bits (248), Expect = 2e-23
Identities = 49/81 (60%), Positives = 56/81 (69%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+D+ G +SF TFFS+TG G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG--ESFTTFFSDTGNGR 58
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P ++RTG
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTG 79
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 103 bits (248), Expect = 2e-23
Identities = 49/81 (60%), Positives = 56/81 (69%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+D+ G +SF TFFS+TG G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG--ESFTTFFSDTGNGR 58
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P ++RTG
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTG 79
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 102 bits (245), Expect = 5e-23
Identities = 49/81 (60%), Positives = 56/81 (69%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+++ GG SF TFFS+TG G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG--SFTTFFSDTGNGR 58
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P ++RTG
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTG 79
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 102 bits (245), Expect = 5e-23
Identities = 49/81 (60%), Positives = 56/81 (69%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+++ GG SF TFFS+TG G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG--SFTTFFSDTGNGR 58
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P ++RTG
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTG 79
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 93.5 bits (222), Expect = 3e-20
Identities = 44/80 (55%), Positives = 50/80 (62%)
Frame = +3
Query: 81 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGST 260
RE IS+HVGQAGVQIGNACWEL+CLEHGIQPDG D T ++ NTFF+ET G
Sbjct: 8 REVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGGKH 67
Query: 261 YPVXXXXXXXXXXXMKVRTG 320
P +VRTG
Sbjct: 68 VPRCLFVDLEPTVVDEVRTG 87
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 89.8 bits (213), Expect = 4e-19
Identities = 45/81 (55%), Positives = 49/81 (60%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE IS+HVGQAGVQIGNACWELYCLEHGI PDG T G S TFFS+TG G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDG---TSMEPDGNSGSLGTFFSDTGYGR 57
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P ++RTG
Sbjct: 58 HVPRSIFVDLEPTVVDEIRTG 78
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 73.3 bits (172), Expect = 4e-14
Identities = 31/62 (50%), Positives = 40/62 (64%)
Frame = +3
Query: 81 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGST 260
REC+S+H+GQAG QIGNACWELYC+EHG+ G + ++ S FFSE+ G
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEK-NKKQQSLQAFFSESMNGKH 64
Query: 261 YP 266
P
Sbjct: 65 VP 66
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 224 QHFLQRDRSWQHVPRAVFVDLEPTXVDE 307
Q F + +HVPRA++VDLEPT +DE
Sbjct: 53 QAFFSESMNGKHVPRAIYVDLEPTVLDE 80
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 49.6 bits (113), Expect = 5e-07
Identities = 24/59 (40%), Positives = 30/59 (50%)
Frame = +3
Query: 144 LYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGSTYPVXXXXXXXXXXXMKVRTG 320
++CLEHGIQPDG D T ++ NTFF+ET G P +VRTG
Sbjct: 1 MFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGGKHVPRCLFVDLEPTVVDEVRTG 59
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 48.8 bits (111), Expect = 9e-07
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE + + GQ G QIG+ WE+ EHGI P GQ D + + N +++E G+
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDL--QLERINVYYNEAGSNK 58
Query: 258 TYP 266
P
Sbjct: 59 YVP 61
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 254 QHVPRAVFVDLEPTXVD 304
++VPRAV VDLEP +D
Sbjct: 58 KYVPRAVLVDLEPGTMD 74
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 48.8 bits (111), Expect = 9e-07
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE + + GQ G QIG+ WE+ EHGI P GQ D + + N +++E G+
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDL--QLERINVYYNEAGSNK 58
Query: 258 TYP 266
P
Sbjct: 59 YVP 61
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 254 QHVPRAVFVDLEPTXVD 304
++VPRAV VDLEP +D
Sbjct: 58 KYVPRAVLVDLEPGTMD 74
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE + V GQ G QIG WE+ EHGIQPDG + + + N +++E G
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDL--QLERINVYYNEANGGK 58
Query: 258 TYP 266
P
Sbjct: 59 YVP 61
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 254 QHVPRAVFVDLEPTXVD 304
++VPRAV VDLEP +D
Sbjct: 58 KYVPRAVLVDLEPGTMD 74
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 47.2 bits (107), Expect = 3e-06
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE + V GQ G QIG+ WE+ EHGIQPDG + + + + +++E G
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDL--QLERIDVYYNEANNGK 58
Query: 258 TYP 266
P
Sbjct: 59 YVP 61
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 254 QHVPRAVFVDLEPTXVD 304
++VPRAV VDLEP +D
Sbjct: 58 KYVPRAVLVDLEPGTMD 74
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 46.8 bits (106), Expect = 3e-06
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE + V GQ G QIG+ WE+ EHGIQPDG + + + + +++E G
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDL--QLERIDVYYNEANNGK 58
Query: 258 TYP 266
P
Sbjct: 59 YVP 61
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 254 QHVPRAVFVDLEPTXVD 304
++VPRAV VDLEP +D
Sbjct: 58 KYVPRAVLVDLEPGTMD 74
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/63 (34%), Positives = 30/63 (47%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE + + GQ G QIG WE+ EHGI P G D + + N +++E G
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDL--QLERINVYYNEASGGK 58
Query: 258 TYP 266
P
Sbjct: 59 YVP 61
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 42.7 bits (96), Expect = 6e-05
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD 194
M+E I+V VGQ G QIG WE EHG+Q DG D
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGD 39
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 42.7 bits (96), Expect = 6e-05
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD 194
M+E I+V VGQ G QIG WE EHG+Q DG D
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGD 39
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 34.7 bits (76), Expect = 0.015
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 90 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQ 182
++VHVGQ G Q+ A W+ EHGI GQ
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQ 38
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 230 FLQRDRSWQHVPRAVFVDLEPTXVD 304
F Q D +VPRAV VDLEP ++
Sbjct: 53 FYQADDD-HYVPRAVLVDLEPRVIN 76
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 34.7 bits (76), Expect = 0.015
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 90 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQ 182
++VHVGQ G Q+ A W+ EHGI GQ
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQ 38
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 230 FLQRDRSWQHVPRAVFVDLEPTXVD 304
F Q D +VPRAV VDLEP ++
Sbjct: 53 FYQADDD-HYVPRAVLVDLEPRVIN 76
>U53181-11|AAM29689.1| 315|Caenorhabditis elegans Hypothetical
protein F36D4.5b protein.
Length = 315
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 106 AKPESRSVMPAGSFTAWSTXSSLMARCPQTRPSGVETILSTLSSARPELAARTP 267
++ +SRS P F W+T + + QT P+G T++ S++ TP
Sbjct: 248 SEKKSRSNSPP-IFRIWNTIKATINGTQQTAPTGAATVIPASSASNIGKTNSTP 300
>U53181-10|AAA93489.2| 334|Caenorhabditis elegans Hypothetical
protein F36D4.5a protein.
Length = 334
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 106 AKPESRSVMPAGSFTAWSTXSSLMARCPQTRPSGVETILSTLSSARPELAARTP 267
++ +SRS P F W+T + + QT P+G T++ S++ TP
Sbjct: 267 SEKKSRSNSPP-IFRIWNTIKATINGTQQTAPTGAATVIPASSASNIGKTNSTP 319
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 120 QIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETG 248
QI +C CL +G++P G P I G FF+++G
Sbjct: 63 QICRSCRHKKCLSNGMKPGGVQPKKPNIETG----RAFFTKSG 101
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 120 QIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETG 248
QI +C CL +G++P G P I G FF+++G
Sbjct: 81 QICRSCRHKKCLSNGMKPGGVQPKKPNIETG----RAFFTKSG 119
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 120 QIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETG 248
QI +C CL +G++P G P I G FF+++G
Sbjct: 63 QICRSCRHKKCLSNGMKPGGVQPKKPNIETG----RAFFTKSG 101
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 177 GQMPTDKTIGGGDDSFNTFFSE 242
GQMPTDK + S NT +S+
Sbjct: 156 GQMPTDKNVNSVITSDNTTYSD 177
>U41010-3|AAF98587.1| 655|Caenorhabditis elegans Hypothetical
protein T05A12.3 protein.
Length = 655
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -1
Query: 271 STGYVLPAPVSLKKVLKESSPPPMVLSVGIWPSGWXPCSRQ*SSQQAL 128
S G+ PA ++K ++ PP ++ V I + P + QQAL
Sbjct: 367 SNGHSAPAKKEVRKPFQKGPTPPPLIPVAIPGKKYLPGDVRYKEQQAL 414
>AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical
protein H01A20.1 protein.
Length = 463
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 102 VGQAGVQIGNACWELYCLEHGIQPDGQMP-TDKT 200
+ +AG + +C CLE G++PD P DKT
Sbjct: 97 IDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKT 130
>AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 102 VGQAGVQIGNACWELYCLEHGIQPDGQMP-TDKT 200
+ +AG + +C CLE G++PD P DKT
Sbjct: 97 IDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKT 130
>AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 102 VGQAGVQIGNACWELYCLEHGIQPDGQMP-TDKT 200
+ +AG + +C CLE G++PD P DKT
Sbjct: 97 IDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKT 130
>AC090999-24|AAK26151.1| 502|Caenorhabditis elegans Hypothetical
protein Y82E9BR.1 protein.
Length = 502
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 235 KKVLKESSPPPMVLSVGIWP 176
K +L + PP+ LS+ IWP
Sbjct: 61 KAILTDGEHPPLSLSIVIWP 80
>Z82268-7|CAB05196.2| 138|Caenorhabditis elegans Hypothetical
protein F52B11.6 protein.
Length = 138
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 199 PSGVETILSTLSSARPELAARTPCCLRR 282
PSG T +T+ + LA P CLRR
Sbjct: 60 PSGSATTTTTVKTTAAPLAQVNPQCLRR 87
>AF026212-1|AAF99971.1| 807|Caenorhabditis elegans Hypothetical
protein F52G3.3 protein.
Length = 807
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -2
Query: 201 WSCLWASGHQAGXRAPGSKAPSRHYRS 121
W C+ +G G R G P H RS
Sbjct: 754 WKCINVNGTDCGSRENGRNHPHGHIRS 780
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,204,192
Number of Sequences: 27780
Number of extensions: 143052
Number of successful extensions: 535
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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