Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1392
(322 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 134 9e-33
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 134 9e-33
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 133 2e-32
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 133 2e-32
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 116 4e-27
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 116 4e-27
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 112 4e-26
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 49 8e-07
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 49 8e-07
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 48 1e-06
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 48 2e-06
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 48 2e-06
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 47 3e-06
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 46 4e-06
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 46 7e-06
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 45 1e-05
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 44 3e-05
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 43 4e-05
At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid t... 29 0.69
At2g34670.1 68415.m04259 proline-rich family protein contains pr... 28 1.2
At2g31690.1 68415.m03868 lipase class 3 family protein similar t... 28 1.2
At3g19180.1 68416.m02435 cell division protein-related weak simi... 26 4.9
At5g16590.1 68418.m01942 leucine-rich repeat transmembrane prote... 26 6.5
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 26 6.5
At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein ... 26 6.5
At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger) fa... 25 8.6
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,... 25 8.6
At3g26900.1 68416.m03366 shikimate kinase family protein similar... 25 8.6
At3g23790.1 68416.m02990 AMP-binding protein, putative similar t... 25 8.6
At2g32620.1 68415.m03982 cellulose synthase family protein simil... 25 8.6
At1g75240.1 68414.m08741 zinc finger homeobox family protein / Z... 25 8.6
At1g56080.1 68414.m06439 expressed protein 25 8.6
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 134 bits (325), Expect = 9e-33
Identities = 57/81 (70%), Positives = 65/81 (80%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P +VRTG
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTG 81
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 134 bits (325), Expect = 9e-33
Identities = 57/81 (70%), Positives = 65/81 (80%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P +VRTG
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTG 81
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 133 bits (322), Expect = 2e-32
Identities = 57/81 (70%), Positives = 64/81 (79%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P +VRTG
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTG 81
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 133 bits (322), Expect = 2e-32
Identities = 57/81 (70%), Positives = 64/81 (79%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P +VRTG
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTG 81
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 116 bits (279), Expect = 4e-27
Identities = 50/81 (61%), Positives = 59/81 (72%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAG
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P +VRTG
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTG 81
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 116 bits (279), Expect = 4e-27
Identities = 50/81 (61%), Positives = 59/81 (72%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAG
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P +VRTG
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTG 81
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 112 bits (270), Expect = 4e-26
Identities = 48/81 (59%), Positives = 58/81 (71%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSET +G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 258 TYPVXXXXXXXXXXXMKVRTG 320
P +VRTG
Sbjct: 61 HVPRAVFLDLEPTVIDEVRTG 81
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 48.8 bits (111), Expect = 8e-07
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCGR 58
Query: 258 TYP 266
P
Sbjct: 59 FVP 61
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 48.8 bits (111), Expect = 8e-07
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCGR 58
Query: 258 TYP 266
P
Sbjct: 59 FVP 61
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 48.0 bits (109), Expect = 1e-06
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGD---DSFNTFFSETG 248
MRE + + GQ G QIG+ WE+ C EHGI P G + +G D + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYVGNSDLQLERVNVYYNEAS 55
Query: 249 AGSTYPVXXXXXXXXXXXMKVRTG 320
G P VRTG
Sbjct: 56 CGRYVPRAILMDLEPGTMDSVRTG 79
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/52 (48%), Positives = 30/52 (57%)
Frame = +3
Query: 81 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFF 236
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFF 52
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/52 (48%), Positives = 30/52 (57%)
Frame = +3
Query: 81 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFF 236
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFF 52
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 46.8 bits (106), Expect = 3e-06
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE + V GQ G QIG+ WE+ C EHG+ P G+ D + + N +++E G
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD-SADLQLERINVYYNEASGGR 59
Query: 258 TYP 266
P
Sbjct: 60 YVP 62
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 254 QHVPRAVFVDLEPTXVD 304
++VPRAV +DLEP +D
Sbjct: 59 RYVPRAVLMDLEPGTMD 75
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/63 (38%), Positives = 31/63 (49%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE + + GQ G QIG WE+ C EHGI GQ D + + N +F+E G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDL--QLERINVYFNEASGGK 58
Query: 258 TYP 266
P
Sbjct: 59 YVP 61
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 254 QHVPRAVFVDLEPTXVD 304
++VPRAV +DLEP +D
Sbjct: 58 KYVPRAVLMDLEPGTMD 74
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 45.6 bits (103), Expect = 7e-06
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE + + GQ G QIG+ WE+ C EHGI G+ D T + N +++E G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNEASGGR 59
Query: 258 TYP 266
P
Sbjct: 60 YVP 62
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 254 QHVPRAVFVDLEPTXVD 304
++VPRAV +DLEP +D
Sbjct: 59 RYVPRAVLMDLEPGTMD 75
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE + + GQ G QIG WE+ C EHGI GQ D + + + +F+E G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPL--QLERIDVYFNEASGGK 58
Query: 258 TYP 266
P
Sbjct: 59 YVP 61
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 254 QHVPRAVFVDLEPTXVD 304
++VPRAV +DLEP +D
Sbjct: 58 KYVPRAVLMDLEPGTMD 74
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE + + GQ G QIG WE+ C EHGI G+ + + + N +++E G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDL--QLERVNVYYNEASCGR 58
Query: 258 TYP 266
P
Sbjct: 59 FVP 61
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 43.2 bits (97), Expect = 4e-05
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 78 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 257
MRE + + GQ G QIG+ WE+ LEHGI G+ D + + N +++E G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSEL--QLERVNVYYNEASCGR 58
Query: 258 TYP 266
P
Sbjct: 59 YVP 61
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 254 QHVPRAVFVDLEPTXVD 304
++VPRAV +DLEP +D
Sbjct: 58 RYVPRAVLMDLEPGTMD 74
>At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein - Hordeum vulgare, EMBL:AF109195;
contains Pfam protease inhibitor/seed storage/LTP family
domain PF00234
Length = 158
Score = 29.1 bits (62), Expect = 0.69
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -1
Query: 247 PVSLKKVLKESSPPPMVLSVGIWPSGWXPCSRQ*SSQQALPI 122
PVS L +SPP +W SGW P +PI
Sbjct: 101 PVSACDSLPPASPPTANGQAPVWGSGWAPAPSPSKGNSLIPI 142
>At2g34670.1 68415.m04259 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 561
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1
Query: 322 VPVRTFINXSRFKIDEDSTGYVLPAPVSLKKVLKESSPPP 203
V +R F +++ S G LP P S L S PPP
Sbjct: 50 VTLRQFTESETLELENTSYGLSLPLPPSPPPTLPPSPPPP 89
>At2g31690.1 68415.m03868 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile PF01764: Lipase
Length = 484
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 310 TFINXSRFKIDEDSTGYVLPAPVSLKKVLKESSPPPM 200
++ N R K S+ L APV L + SSPPP+
Sbjct: 35 SYQNPKRLKTANSSSSSSLLAPVILNSPVASSSPPPI 71
>At3g19180.1 68416.m02435 cell division protein-related weak
similarity to cell division protein Ftn2 [Synechococcus
sp. PCC 7942] GI:16226084
Length = 819
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 61 KKLKSKCVSASLFTLAKPESRSVMPAGSFTAWSTXSSLMARCPQTR 198
K+L+S SA ++ ESRS S AW S++A P TR
Sbjct: 427 KQLESNSDSAVRNSILGKESRSTSATPSLEAWL-MESVLANFPDTR 471
>At5g16590.1 68418.m01942 leucine-rich repeat transmembrane protein
kinase, putative
Length = 625
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 253 PAPVSLKKVLKESSPPPMVLSVGIWPSG 170
P P S V KES+ PP V++ G +G
Sbjct: 287 PVPTSSAAVAKESNGPPAVVANGASENG 314
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 143 LPAGITDLDSGLANVNRDALTHFDLS 66
+P T+ D + VNRD L+H++++
Sbjct: 346 MPGSPTEADPSSSLVNRDGLSHYNMN 371
>At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 362
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 182 DAHRQDHRGWRRFFQHFLQRDRSWQHVPRAVFVDLEPTXVDEGP 313
D + Q HR + L+RD+ + V + V+V EPT + P
Sbjct: 51 DQNLQMHRRRHKVPWKLLKRDKKDEEVRKRVYVCPEPTCLHHDP 94
>At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 376
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -1
Query: 292 RFKIDEDSTGYVLPAPVSLKKVLKESSPPP 203
RF I++ + P P +L SPPP
Sbjct: 5 RFTIEQKDGNFAYPPPFYKDPILSPPSPPP 34
>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 932
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 156 EHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGSTYP 266
E GIQ +G + ++ + G D +T F + A ST P
Sbjct: 881 EGGIQANGSL-SETDVEFGSDESDTDFGDNSASSTTP 916
>At3g26900.1 68416.m03366 shikimate kinase family protein similar to
shikimate kinase precursor GB:CAA45121 [Lycopersicon
esculentum]; contains Pfam shikimate kinase domain
PF01202
Length = 280
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 144 LYCLEHGIQPDGQMPTDKTIGGGDDSFNT 230
L L HGI +P D T G DDSF++
Sbjct: 177 LALLRHGISIWIDVPLDITAKGDDDSFHS 205
>At3g23790.1 68416.m02990 AMP-binding protein, putative similar to
AMP-binding protein GB:CAA96521 from [Brassica napus]
(Plant Mol. Biol. (1997) 33 (5), 911-922); contains Pfam
AMP-binding enzyme domain PF00501; identical to cDNA
acyl-CoA synthetase-like protein GI:20799732
Length = 722
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1
Query: 304 INXSRFKIDEDSTGYVLPAPVSLKKVLKESSPPPM 200
I + FKI + TG VLP P S K ++K PP M
Sbjct: 506 IKDTEFKIVDHETGTVLP-PGS-KGIVKVRGPPVM 538
>At2g32620.1 68415.m03982 cellulose synthase family protein similar
to Zea mays cellulose synthase-5 [gi:9622882], -4
[gi:9622880], -9 [gi:9622890]
Length = 757
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 87 CISVHVGQAGVQIGNACWELYCLEHGIQ 170
C+ + + AG+ WE CL H IQ
Sbjct: 569 CLGITMLLAGMHCLYTLWEFMCLGHSIQ 596
>At1g75240.1 68414.m08741 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 309
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 42 FYI*A*KKTQIKMRECISVHVGQAGVQIGNACWE 143
F I A K ++ REC+ H G + + C E
Sbjct: 64 FSISAAAKPTVRYRECLKNHAASVGGSVHDGCGE 97
>At1g56080.1 68414.m06439 expressed protein
Length = 310
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 187 PQTRPSGVETILSTLSSARPELAARTP 267
P PSG ILST +S R AA +P
Sbjct: 174 PAFTPSGTPKILSTAASPRSYSAASSP 200
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,809,107
Number of Sequences: 28952
Number of extensions: 135857
Number of successful extensions: 501
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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