Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1391
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   1.5  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    27   2.0  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   3.5  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    25   6.2  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +3

Query: 303 QKLRKENEICALKGWRDECFEVSTAFYQESLLEMDRSAICLFGIRNYGVSV 455
           QKL + N   +++  RD   E S A   E L ++  S+IC  G RNY  SV
Sbjct: 303 QKLAQINLAVSIRSMRDIFREESCAVLLEWLADIAGSSIC--GKRNYFSSV 351


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/50 (22%), Positives = 24/50 (48%)
 Frame = +1

Query: 388 RAYWRWTGVPYAYLVLEIMASVSPGYLNHPSKRTMHLVTAAEFYQTNMGW 537
           +++W +T  P+A+ +  +   +    LNHP    +  +    F  T+ G+
Sbjct: 420 QSFWLFTSKPFAFYLEHLHNKIQGLSLNHPKMNHLLELLKEHFKDTSEGY 469


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 156 WASSWSCPT*CFKIFAAFPRGV 221
           W S WS P  C +++  FP G+
Sbjct: 30  WVSLWSVPESCPEVYDFFPPGL 51


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 488 LCIWLQQRSFTKQTW 532
           L IW+ +RS TKQTW
Sbjct: 151 LRIWVPRRSPTKQTW 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,384
Number of Sequences: 5004
Number of extensions: 53751
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)