Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1391
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,713...    29   2.7  
05_03_0679 + 16879370-16879400,16879586-16879716,16880178-168802...    27   8.3  
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295...    27   8.3  

>10_03_0021 +
           7129786-7130117,7130227-7130347,7131048-7131136,
           7131375-7131459,7131609-7131771,7132861-7132937,
           7133016-7133160,7133236-7133537,7133615-7133720,
           7134781-7134935,7135556-7135712,7135799-7135891,
           7136232-7136359,7136439-7136696,7136855-7137145,
           7137235-7137318,7138335-7138468,7138557-7138784,
           7139778-7139958,7140021-7140108,7140268-7140434,
           7140750-7141012,7141117-7141120
          Length = 1216

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 148 IVAGHQVGLVRPDVLKYLQRFPEVFRIAGKYVELNPLLEITKKGPQELL 294
           ++ G  +G+   D++ Y Q  P V  I   Y     +LE+T +  +E L
Sbjct: 844 VIYGGSLGVNSVDMINYFQGIPRVVPITEGYNPATWMLEVTTQASEERL 892


>05_03_0679 +
           16879370-16879400,16879586-16879716,16880178-16880255,
           16880582-16880626,16880727-16880765,16881260-16881356,
           16881528-16881937
          Length = 276

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 330 CALKGWRDECFEVSTAFYQESLLEMDRSAICLFGIRNYGVSVTRLS 467
           C  +   + CFE+S +      +EM  SAI L G+ N G S  R++
Sbjct: 169 CISEAKGNHCFELSIS--STFSIEMSLSAITLLGMLNLGHSAIRVA 212


>02_05_1044 +
           33728623-33728768,33728814-33728993,33729446-33729523,
           33729834-33729930,33730206-33730339,33730944-33731025,
           33731631-33731717,33731875-33731981,33732674-33732845,
           33733018-33733259,33733482-33733563,33733954-33734019,
           33734040-33734159,33734935-33735012,33735083-33735178,
           33735791-33735897,33736031-33736199,33736402-33736452,
           33736567-33736650,33736946-33737040,33737175-33737265,
           33737342-33737488,33737614-33737676
          Length = 857

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 500 LQQRSFTKQTWAGKWELLW*PVVSRGD 580
           LQ+R+  K TW G+W++     +S GD
Sbjct: 76  LQRRADCKDTWPGQWDISSAGHISAGD 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,413,152
Number of Sequences: 37544
Number of extensions: 343200
Number of successful extensions: 813
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)