Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1391
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51336| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.032
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)              33   0.17 
SB_14925| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_21816| Best HMM Match : DUF1279 (HMM E-Value=1.1)                   28   6.4  
SB_2764| Best HMM Match : Phytochelatin (HMM E-Value=0)                28   6.4  
SB_9583| Best HMM Match : GLTT (HMM E-Value=2.3)                       27   8.5  

>SB_51336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 35.5 bits (78), Expect = 0.032
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 255 AFRDYKERTTRVADVLQKLRKENEICALKGWRDE 356
           + + ++ERT  V DV+++ RK +    L+GWR+E
Sbjct: 93  SLKTFEERTKGVNDVMEEFRKNDVFVTLRGWREE 126


>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
          Length = 2007

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
 Frame = +3

Query: 207  FPRGVQNRREICGIKSAFRDYKERTTRVADVLQKLRKENEIC-ALKGWRDECFEVSTAFY 383
            +P  V+    + G+ S F D KE  T++A +     K+  I  +LKGW++  +EV    Y
Sbjct: 924  YPVMVRAAFALGGMGSGFADDKEELTQLASMALANSKQLIIDKSLKGWKEIEYEVVRDAY 983

Query: 384  QESLLEMDRSAICLFGIRNYGVSVTRLSQSSQ*KDYAFGYSSGVLPNKHGLXNGNC 551
               +   +   +   GI      V   SQ+    +Y    S+ +   KH    G C
Sbjct: 984  DNCITVCNMENVDPLGIHTGESIVVAPSQTLTNSEYNMLRSTAIKVIKHLGVVGEC 1039


>SB_14925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = -3

Query: 555 QSNSHXPAHVCLVKLRCCNQMHSPF----TGMIEIAG*H 451
           Q+  H   H CL+K   C ++HS F     GM  I G H
Sbjct: 168 QTLHHGDGHSCLLKGTSCQEIHSRFPHSLDGMFYIVGNH 206


>SB_21816| Best HMM Match : DUF1279 (HMM E-Value=1.1)
          Length = 894

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
 Frame = -3

Query: 528 VCLVKLRCCNQMHSP--FTGMIEIAG*H*RHNF*YQIGIW--HSCPSPIGSLDKTQC--* 367
           +CL   R C + H    F  +I +A  H      +QI     HSCPSP+G  ++  C   
Sbjct: 485 LCLGVYRVCAERHGVRGFLQLIVVA--HDALRVYHQIARHQPHSCPSPLGGANQLYCTPP 542

Query: 366 LQNTHLSILLMRISHSPSSVFAGHQQLLWSFLCN 265
             +  L+  L+ ++    SV   H  L+  ++ N
Sbjct: 543 WSSLRLTTKLVGMALPIDSVVDLHNDLVSDYIIN 576


>SB_2764| Best HMM Match : Phytochelatin (HMM E-Value=0)
          Length = 413

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -1

Query: 308 FLQDISNSCGPFFVISKSGFNSTYFPAILNTSGKRCKYFKT 186
           + +D+ ++C P  V+ K+G     F  +   +G  C   +T
Sbjct: 244 YTEDLLDNCRPLEVVKKAGITMEEFACLAKCNGAVCSITRT 284


>SB_9583| Best HMM Match : GLTT (HMM E-Value=2.3)
          Length = 586

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 193 KYLQRFPEVFRIAGKYVELNP 255
           KYL+RFPEVF+   ++ E NP
Sbjct: 333 KYLERFPEVFK-RHEFYESNP 352


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,930,310
Number of Sequences: 59808
Number of extensions: 391183
Number of successful extensions: 832
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)