Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1391
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81498-2|CAB04085.1|  760|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    30   1.4  

>Z81498-2|CAB04085.1|  760|Caenorhabditis elegans Hypothetical
           protein F11A6.1b protein.
          Length = 760

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +1

Query: 136 CKPFIVAGHQVGLVRPDVLKYLQRFPEVFRIAGKYVELNPLLEITKKGP 282
           C+ F  + ++     P+V + LQ+FP++ R   K++E++ +  I +K P
Sbjct: 518 CRQFYPSRYKRFSNLPEVYRSLQKFPKISRFFQKFLEVSEVHTIFQKFP 566


>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical
           protein D2085.1 protein.
          Length = 2198

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
 Frame = +3

Query: 207 FPRGVQNRREICGIKSAFRDYKERTTRVADVLQKLRKENEIC---ALKGWRDECFEVSTA 377
           +P  V+    + G+ S F D +E    +A   Q L   N++    +LKGW++  +EV   
Sbjct: 547 YPVLVRAAYALGGLGSGFADNREELIAIAQ--QALAHSNQVLVDKSLKGWKEVEYEVVRD 604

Query: 378 FYQESLLEMDRSAICLFGIRNYGVSVTRLSQSSQ*KDY 491
            Y   +   +   +   GI      V   SQ+   ++Y
Sbjct: 605 AYDNCITVCNMENVDPLGIHTGESVVVAPSQTLSDREY 642


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,061,223
Number of Sequences: 27780
Number of extensions: 298195
Number of successful extensions: 703
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)