Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1390
         (458 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2QUQ2 Cluster: Catalytic activity: Random hydrolysis o...    33   3.0  
UniRef50_Q89V23 Cluster: O-acetylhomoserine sulfhydrylase; n=13;...    32   5.2  
UniRef50_A6FHQ1 Cluster: Ribonuclease E; n=1; Moritella sp. PE36...    31   9.0  
UniRef50_Q8GUI3 Cluster: Putative uncharacterized protein; n=1; ...    31   9.0  

>UniRef50_A2QUQ2 Cluster: Catalytic activity: Random hydrolysis of
           N-acetyl-beta-D-glucosaminide 1 precursor; n=2;
           Aspergillus|Rep: Catalytic activity: Random hydrolysis
           of N-acetyl-beta-D-glucosaminide 1 precursor -
           Aspergillus niger
          Length = 1257

 Score = 33.1 bits (72), Expect = 3.0
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +2

Query: 218 SACCVYRSCIILSISPVVATT-YHGKTPLLASTSYVSSTPLISQPIAYS 361
           S+  +  S  I S SPV  ++     +P ++S++ VSSTP +S P+A S
Sbjct: 521 SSSAIASSSAIASSSPVAPSSPVASSSPAVSSSAIVSSTPAVSTPVASS 569


>UniRef50_Q89V23 Cluster: O-acetylhomoserine sulfhydrylase; n=13;
           Bacteria|Rep: O-acetylhomoserine sulfhydrylase -
           Bradyrhizobium japonicum
          Length = 431

 Score = 32.3 bits (70), Expect = 5.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 248 ILSISPVVATTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQW 394
           +L I  V A  +  K PLL   ++  +TP +S+PI   A  +   + +W
Sbjct: 165 VLDIPKVAAIAHEAKIPLLIDNTF--ATPYLSRPIELGADIVMHSATKW 211


>UniRef50_A6FHQ1 Cluster: Ribonuclease E; n=1; Moritella sp. PE36|Rep:
            Ribonuclease E - Moritella sp. PE36
          Length = 1125

 Score = 31.5 bits (68), Expect = 9.0
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
 Frame = +2

Query: 248  ILSISPVVATT-YHGKTPLLASTSYVSSTPLISQ-PIAYSA 364
            +++ +PVVA T    +TP++A T  V+ TP++++ P++Y A
Sbjct: 1011 VVTEAPVVAETPVVAETPVVAETPVVAETPVVTETPVSYQA 1051


>UniRef50_Q8GUI3 Cluster: Putative uncharacterized protein; n=1;
           Arabidopsis thaliana|Rep: Putative uncharacterized
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 1157

 Score = 31.5 bits (68), Expect = 9.0
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 284 HGKTPLLASTSYVSS-TPLISQPIAYSAHFIKKRSPQ 391
           +G+TP L  T    + TP  SQP AYSA+F K++  Q
Sbjct: 520 NGRTPALGVTGGGGTHTPRSSQPPAYSAYFSKQQQQQ 556


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 406,238,005
Number of Sequences: 1657284
Number of extensions: 6797863
Number of successful extensions: 14900
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14817
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24351434270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)