Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1390
         (458 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.4  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   2.4  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   4.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   4.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   5.5  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   7.3  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   7.3  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   7.3  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    20   9.6  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    20   9.6  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    20   9.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 5   NVQVDSVCFISCRGC*-AWNLPDASRDVPNNCGFSG 109
           N++++ V    C  C  A +L +++R+VP  C F+G
Sbjct: 718 NMKLEKVPGECCAICVNATSLVESNRNVPQKCIFNG 753


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 108 PEKPQLLGTSREASGRFQAQQPRQLIKHT 22
           PEK    G +   S   QA QP   I+H+
Sbjct: 117 PEKGGGAGAAASGSAAAQAGQPDNAIEHS 145


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 271 SNHLPR*NSSPGFDLLRFFDSFNLATYCVF 360
           S HLP+ +++  FD+ R      L T C F
Sbjct: 314 SQHLPKFSAANFFDIERSTILSVLGTACTF 343


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 252 SMMQERYTQHALREQTAS**NECSHTV*SRPRVRDA-RRC 136
           S    R+T+H ++ +T +     SH     PR   A  RC
Sbjct: 263 SSPSNRFTRHLIQRRTHTRHTTTSHNTRGTPRTTPASSRC 302


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 328 DSFNLATYCVFCSLYQEALST 390
           DSF L  +  +CS  Q  LST
Sbjct: 225 DSFTLEQHRSWCSSSQPVLST 245


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 147 HPSPLVYSTPYGYT 188
           H S   Y  PYGYT
Sbjct: 38  HYSNYHYEDPYGYT 51


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 147 HPSPLVYSTPYGYT 188
           H S   Y  PYGYT
Sbjct: 38  HYSNYHYEDPYGYT 51


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 147 HPSPLVYSTPYGYT 188
           H S   Y  PYGYT
Sbjct: 38  HYSNYHYEDPYGYT 51


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 294 VLPW*VVATTGEIESMMQERYTQHALREQTAS**NECSHT 175
           V PW  +A   E+  ++   YT  +   ++A+  N  S++
Sbjct: 314 VNPWIYLAFNRELPRLLLRHYTASSKNYRSATGGNSASNS 353


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 260 SPVVATTYHGKTPLLASTSYVSSTPL 337
           SP+++  +       A+++ +SSTPL
Sbjct: 136 SPILSNRFGENEEADAASNVISSTPL 161


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 162 VYSTPYGYTHFIK 200
           VYS+  GYT +++
Sbjct: 143 VYSSSVGYTQYVR 155


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,595
Number of Sequences: 336
Number of extensions: 1714
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)