Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1390
         (458 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0239 - 21794691-21795986                                         30   0.78 
01_06_0475 + 29610268-29610711                                         27   5.5  
05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571           27   9.6  

>09_06_0239 - 21794691-21795986
          Length = 431

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 242 CIILSISPVVATTYHGKTPLLAS---TSYVSSTPLISQPIAYSAHFIK 376
           C   S +P  +  + G +P LA+   T+  +STP+++ P+  S +F+K
Sbjct: 218 CFSSSGAPGSSAVFLGGSPELATNATTTPAASTPMVADPVLKSGYFVK 265


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 175 RMATLISSRSGLLP*RMLRISLLHHTLYFSRRSNHLPR*NSS 300
           R+A L SSR+   P   + +SL+H         NH PR +S+
Sbjct: 95  RLALLSSSRAATHPGTNVALSLIHDAYAILSDPNHRPRPSSA 136


>05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571
          Length = 527

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 301 PGFDLLRFFDSFNLATYCVFCSLYQEALSTMARELHRSXFY 423
           P  +++  FD F LA      S+Y E  STM   LH S  Y
Sbjct: 84  PSKEVMNHFDPFYLAVP----SIYYELRSTMGALLHSSHMY 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,350,463
Number of Sequences: 37544
Number of extensions: 199091
Number of successful extensions: 399
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)