Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1390
         (458 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26128| Best HMM Match : DUF725 (HMM E-Value=7.9)                    29   1.4  
SB_10933| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_42202| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_26128| Best HMM Match : DUF725 (HMM E-Value=7.9)
          Length = 213

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 200 EAVCSLSACCVYRSCIILSISP 265
           E  CS++ CC++  C++ +I P
Sbjct: 14  EVACSVTCCCIWMVCMVFTIVP 35


>SB_10933| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 272 ATTYHGKTPLLASTSYVSSTP 334
           AT YHG TP   +T Y  +TP
Sbjct: 326 ATPYHGATPYRGATPYRGATP 346



 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 272 ATTYHGKTPLLASTSYVSSTP 334
           +T YHG TP   ST Y  S P
Sbjct: 386 STPYHGSTPYRGSTPYRGSIP 406


>SB_42202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 134 QQRRASLTLGLLYTVW 181
           Q+R  S+ +GLLYTVW
Sbjct: 294 QERWGSVQIGLLYTVW 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,725,807
Number of Sequences: 59808
Number of extensions: 212857
Number of successful extensions: 474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)