Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1390
         (458 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   0.91 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   8.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   8.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   8.5  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   8.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.5  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 14  VDSVCFISCRGC*AWNLPDASRDVPN 91
           V+ +C I C     W LP  S + PN
Sbjct: 289 VNLICHILCMSDLHWQLPHNSTNPPN 314


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 131 SQQRRASLTLGLLYTVWL 184
           S++RRA+ TLG++  V++
Sbjct: 320 SKERRAARTLGVIMGVFV 337


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 131 SQQRRASLTLGLLYTVWL 184
           S++RRA+ TLG++  V++
Sbjct: 320 SKERRAARTLGVIMGVFV 337


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 131 SQQRRASLTLGLLYTVWL 184
           S++RRA+ TLG++  V++
Sbjct: 320 SKERRAARTLGVIMGVFV 337


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 450 LSNVGVGSNVEXRTM*LTG 394
           + N+G GSN + R M  TG
Sbjct: 54  MPNIGYGSNKKTRHMLPTG 72


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +3

Query: 288 VKLLSWLRPPTF 323
           V+++SWL+ P+F
Sbjct: 162 VRVVSWLQEPSF 173


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +3

Query: 288 VKLLSWLRPPTF 323
           V+++SWL+ P+F
Sbjct: 162 VRVVSWLQEPSF 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,457
Number of Sequences: 438
Number of extensions: 1845
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)