Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1390
         (458 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25430.1 68416.m03162 CAF1 family ribonuclease contains Pfam ...    28   3.5  
At5g38030.1 68418.m04581 MATE efflux family protein similar to r...    27   4.6  
At2g36810.1 68415.m04514 expressed protein                             27   4.6  
At3g59690.1 68416.m06660 calmodulin-binding family protein simil...    27   8.1  
At1g11410.1 68414.m01311 S-locus protein kinase, putative simila...    27   8.1  

>At3g25430.1 68416.m03162 CAF1 family ribonuclease contains Pfam
           domain, PF04857: CAF1 family ribonuclease
          Length = 618

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +2

Query: 227 CVYRSCIILSISPVVATTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSY 406
           C+Y     LS +   A+ +  + P+LA +  VSS+P       +    I+ R   W  S 
Sbjct: 149 CIYEGISYLSRAQESASKFLSENPILADSVTVSSSPATVADTVFVGR-IRSRVKNWRQSC 207

Query: 407 I 409
           I
Sbjct: 208 I 208


>At5g38030.1 68418.m04581 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family; putative
           multidrug efflux protein NorM - Vibrio parahaemolyticus,
           EMBL:AB010463
          Length = 498

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/52 (26%), Positives = 30/52 (57%)
 Frame = +2

Query: 215 LSACCVYRSCIILSISPVVATTYHGKTPLLASTSYVSSTPLISQPIAYSAHF 370
           L+   V  S + +  +P++A  + G+TP ++S + + S  +I Q  AY+ ++
Sbjct: 134 LNVTAVILSLLYIFAAPILA--FIGQTPAISSATGIFSIYMIPQIFAYAVNY 183


>At2g36810.1 68415.m04514 expressed protein 
          Length = 1071

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 131 SQQRRASLTLGLLYTVWLHSFHQEAVCSLSA--CCVYRSCIILSISPVVATTYHGKTPLL 304
           ++ +R  LT+GL+Y   L +F     C L          CI+  + P +   +H K PLL
Sbjct: 92  NEVQRCFLTVGLVYPEDLFTFLLNK-CKLKEDPLTFGALCILKHLLPRLFEAWHSKRPLL 150

Query: 305 ASTS 316
             T+
Sbjct: 151 VDTA 154


>At3g59690.1 68416.m06660 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 517

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 254 SISPVVATTYHGKTPLLASTSYVSSTPLISQPIAY-SAHFIKKRSPQWP 397
           S + V +      +P + S  YVSS   IS  +AY   H+ K  SP+ P
Sbjct: 94  SSTSVASPLVRPASPKVPSQRYVSSPKPISPRVAYPQVHYPKPPSPKPP 142


>At1g11410.1 68414.m01311 S-locus protein kinase, putative similar
           to receptor-like protein kinase [Arabidopsis thaliana]
           gi|4008008|gb|AAC95352; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 840

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 56  WNLPDASRDVPNNCGFSG 109
           W+ P+   D+ N+CGF+G
Sbjct: 280 WSAPEDKCDIYNHCGFNG 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,750,481
Number of Sequences: 28952
Number of extensions: 152378
Number of successful extensions: 335
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)