Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1389
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.41 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.8  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   5.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.0  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 320 GTPWSTAATRGAGAWMMLYSAYEPSPT 400
           G  WS AAT  A A    YSA  P P+
Sbjct: 105 GLFWSPAATAAATATEYKYSAAAPGPS 131


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 182 PPLSDTSDTEPSRDSEGDSR 241
           PPLS   D  P +   GD+R
Sbjct: 539 PPLSQIHDLSPDQFCNGDNR 558


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 40   RSSTSEGRPHRPPEAAR*SSRLQETV 117
            ++ T+EG P +PP+ A  ++   +T+
Sbjct: 1092 KAYTAEGVPEQPPDKATCTTLTAQTI 1117


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 8   EWVIRKETELNALAPPRGDLTALL 79
           E V +K +   A APP  DLT  L
Sbjct: 398 EEVTQKPSSTKAPAPPSRDLTTTL 421


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 150 SSAEGSTSPTNHLSPTPVILNHLE 221
           S+ +G+T P ++   +P +LN +E
Sbjct: 710 STKDGTTVPESNNGSSPSVLNAIE 733


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,398
Number of Sequences: 336
Number of extensions: 2751
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)