Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1389
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    29   0.76 
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    28   1.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.1  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   9.4  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   9.4  

>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 96  IAPSGDSWKTSVQWWRATSSAEGS 167
           +AP GD W+ +V +W+   S E +
Sbjct: 260 LAPKGDDWEQAVAYWKTLRSDENA 283


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +1

Query: 355 RCLDDAVQRVRAFTNSLDELASRVQAAEAARSSWRGPGDARDARAQLD 498
           R  + ++Q +RA  N+L E +  + AA+  R   +   DA DAR +LD
Sbjct: 134 RASNPSIQVIRADFNNL-ERSHIISAAKRPRDVSKNAADAVDARIELD 180


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 395 VKARTRCTASSKHLPHASLRSTRVFHLSASLATSRRIERASSRACSSQT 249
           + + T  +  S +LP A+  S      S++LATS  +  +SSR  S+ +
Sbjct: 760 IVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSSSRTISTSS 808


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 364 PSTCPTRRCGRPGCSTCQR 308
           P+  PT+R  + GC TC+R
Sbjct: 23  PTPKPTKRRTKTGCLTCRR 41


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +1

Query: 295  EVAKLADKWNTLVDRSDAWGRCLDDAVQRVRAF 393
            ++  + D ++++V ++ AWGR ++DAV++   F
Sbjct: 911  DIILMDDNFSSIV-KAIAWGRTVNDAVKKFLQF 942


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,137
Number of Sequences: 5004
Number of extensions: 45787
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)