Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1389
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0595 + 4420112-4420401,4420518-4420607,4421883-4421931,442... 31 0.79
06_01_0819 - 6191262-6192236 30 1.4
12_01_0882 - 8495717-8495761,8496414-8496860 30 1.8
08_02_0833 - 21623721-21623821,21624076-21624667 30 1.8
08_01_0397 - 3509186-3510291,3510322-3512335 29 2.4
08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511... 29 3.2
06_03_1489 + 30492702-30493760 29 3.2
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158 29 3.2
03_02_0090 - 5564326-5567280 29 3.2
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 29 3.2
10_08_0340 - 16934317-16934478,16934569-16934745,16934842-169349... 29 4.2
06_01_0410 + 2928382-2930973 29 4.2
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151... 29 4.2
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 28 5.6
12_01_0639 + 5383967-5385951,5386973-5387066,5387410-5387841,538... 28 7.4
03_05_0519 - 25131614-25134778 28 7.4
02_01_0546 + 4024793-4025025,4026259-4026372,4026482-4026577,402... 28 7.4
02_01_0027 - 168684-169289 28 7.4
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304... 28 7.4
09_03_0009 + 11463049-11463063,11464136-11464492 27 9.7
04_03_0815 - 19949584-19950111,19950210-19950632 27 9.7
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 27 9.7
02_01_0780 - 5818597-5819181 27 9.7
>02_01_0595 +
4420112-4420401,4420518-4420607,4421883-4421931,
4423337-4424020
Length = 370
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -3
Query: 247 VAAGVAFAVSRWFSITGVGERWFVG--DVLPSAEEVALHHWTLVFQLSPEGAMIILL 83
VA G+A+A WF ++ V E+W G DV+ + ++ H LV ++ A+ +LL
Sbjct: 301 VAMGLAYAAGAWFYVSRVPEKWRPGVFDVVGHSHQI-FHVLVLVGAVTHYVAVDVLL 356
>06_01_0819 - 6191262-6192236
Length = 324
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 597 IAGFCLSLVSVLERVAHQPISSAVAVELWLGHSIQLCPSVSCVAW 463
+ GFC+S H P+S A A W+G+S CP C AW
Sbjct: 173 VEGFCMSRCGT-----HGPVSRAGAAYAWVGNSATQCPG-QC-AW 210
>12_01_0882 - 8495717-8495761,8496414-8496860
Length = 163
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 61 RPHRPPEAAR*SSRLQETVGRQASSGGEQPPQ 156
R PP A +R Q TV R GGE PPQ
Sbjct: 111 RSRPPPSAEASDARRQPTVVRGLPQGGEAPPQ 142
>08_02_0833 - 21623721-21623821,21624076-21624667
Length = 230
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 278 ASSRACSSQTGSRGSRLRCLEMVQYHWCRREVVRW 174
A++ A + G G LE V WCRRE RW
Sbjct: 67 ATTGAIGANNGKAGGEEDVLEEVWKAWCRRESRRW 101
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 29.5 bits (63), Expect = 2.4
Identities = 30/108 (27%), Positives = 44/108 (40%)
Frame = +1
Query: 16 HQERDRIERSSTSEGRPHRPPEAAR*SSRLQETVGRQASSGGEQPPQRKAVHRQRTTSLR 195
H RD+ + S R HR + R SSR R ++ +R+ ++R R
Sbjct: 12 HHRRDKEKDRERSSSRHHRDRDRERSSSRHHHREDRDDDRDRDRDRERRHREKERDREER 71
Query: 196 HQ*Y*TISRQRRRLPRLPVCEEQARELARSIRREVAKLADKWNTLVDR 339
+ + R EE+ RE RS RRE A A++ VDR
Sbjct: 72 KAREREEREKEKERERARRREERDRE-ERSRRREAA--AEEEEEDVDR 116
>08_01_0576 -
5114636-5115151,5115254-5116183,5116898-5117614,
5119630-5119746,5119930-5120295,5121365-5121634
Length = 971
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 52 SEGRPHRPPE-AAR*SSRLQETVGRQASSGGEQPPQ 156
++G+PH PP+ S LQET+ A S PPQ
Sbjct: 680 NQGQPHHPPQFHPHPHSHLQETIRSFAPSMSVAPPQ 715
>06_03_1489 + 30492702-30493760
Length = 352
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 364 DDAVQRVR--AFTNSLDELASRVQAAEAARSSWRGPGDARDARAQLDAVSKP 513
DD VQ R A T + A+R AAE A + + AR A LD++S+P
Sbjct: 34 DDIVQAARSAASTAAQAAAAARATAAEKAAVAAKARAAARAAMEFLDSISRP 85
>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
Length = 974
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 37 ERSSTSEGRPHRPPEAAR*SSRLQETVGRQASSGGEQPP 153
E+ T+ G+P + P +RL++ +GR+ S G + P
Sbjct: 424 EKPQTASGKPKKLPRRPSGLARLRKPLGRRPDSAGPRSP 462
>03_02_0090 - 5564326-5567280
Length = 984
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 402 RVGEGSYALYSIIQAPAPRVAAVDQGVPLVSELGHLAADRAG 277
R G GS+A + AP P AAV L LG++A D G
Sbjct: 147 RRGVGSFAATTHQSAPTPAAAAVGTEDYLKEALGYIADDAVG 188
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 8 EWVIRKETELNALAPPRGDLTALL-KQQDDHRAFRRQLEDK 127
E +I +ET+L A ++++L KQQ+ +A +R LED+
Sbjct: 494 ERIILRETQLRAFYSTTEEISSLFAKQQEQLKAMQRTLEDE 534
>10_08_0340 -
16934317-16934478,16934569-16934745,16934842-16934940,
16935025-16935225,16935389-16935409,16935554-16935661,
16935749-16936130,16936693-16936912,16938673-16938827,
16938960-16939183,16939648-16939707
Length = 602
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 211 FSITGVGERWFVGDVLPSAEEVALHHWTLVFQLS 110
FS TG + W +GD L SAE+ TL S
Sbjct: 483 FSKTGTAKVWLIGDGLDSAEQFRAQKGTLFIPYS 516
>06_01_0410 + 2928382-2930973
Length = 863
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 316 KWNTLVDRSDAWGRCLDDAVQRVRAFTNSLDELASRVQAAEAA 444
+W T D WG+ L VR DE+ SR+ +A A
Sbjct: 25 QWTTHGGSDDCWGQDLSHGGDTVRGARQVFDEMPSRLGSAAGA 67
>04_04_1049 +
30414545-30414596,30414732-30414853,30415121-30415198,
30415329-30415459,30415644-30417552,30417797-30417836,
30418194-30418259,30418583-30418734
Length = 849
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = -2
Query: 404 RELVKARTRCTASSKHLPHASLRSTRVFHLSASLATSRRIERASSRACSSQTGSRGS 234
R L + + H PH + A +++RRI+R SR +S RG+
Sbjct: 305 RSLSREPSSAVQERGHGPHRGASPPAAMRVGAEGSSTRRIKRLDSRLSASMVSRRGT 361
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 115 VGRQASSGGEQPPQ--RKAVHRQRTTSLRHQ*Y*TISRQRRR 234
+G +S+GG P RKA H +TT +RHQ I +RR
Sbjct: 603 LGDSSSAGGSGPVVFFRKATHILQTTRVRHQIAKQIQELKRR 644
>12_01_0639 + 5383967-5385951,5386973-5387066,5387410-5387841,
5387935-5388219,5388324-5388641,5388756-5388983,
5389264-5389364,5389447-5389552,5389782-5390132,
5390262-5390401,5390687-5390861,5390937-5390954
Length = 1410
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 17 IRKETELNALAPPRG--DLTALLKQQDDHRAFRRQLEDKRPVVESNLLSGRQY 169
IRK+ ++L P G DL + ++ D + + R E+K P V+ + GR+Y
Sbjct: 1254 IRKKGSSHSLIPQFGATDLRSTVEATDHNDSPDRHDENKNPEVKDGMNHGRKY 1306
>03_05_0519 - 25131614-25134778
Length = 1054
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +2
Query: 335 TAATRGAGAWMMLYSAYEPSPTLLTSSPAESKQLKRPGLHGEDQATQETLGH 490
T A AG W +++ ++ S T + ++ K+P GE LG+
Sbjct: 342 TRAATAAGEWDQVFAFHKDSLTATSLEVTVHEEAKKPAAEGEATPPDTNLGY 393
>02_01_0546 +
4024793-4025025,4026259-4026372,4026482-4026577,
4026780-4026822,4026958-4027098,4027235-4027315,
4028032-4028130,4028225-4028350
Length = 310
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = +1
Query: 268 RELARSIRREVAKLADKWNTLVDRSDAWGRCLDDAVQRVRAFTNSLDELASRVQAAEAAR 447
+ L +++ K+ +KWNT+ + W +++A + V F +E + A R
Sbjct: 220 KNLRDKVKQHQEKVGEKWNTMAKLQEEW---VENADRWVAGFLEKFEEGCHSMGTAIKER 276
Query: 448 SSWRGPGDARD 480
R +RD
Sbjct: 277 IQERLKAQSRD 287
>02_01_0027 - 168684-169289
Length = 201
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -2
Query: 389 ARTRCTASSKHLPHASLRSTRVFHLSASLATSRRIERASSRAC 261
A C AS P +S R H A LAT I+ A+S C
Sbjct: 58 AYDHCVASLTADPRSSSSEARSLHGLAMLATRMAIDHATSTVC 100
>01_03_0088 +
12327339-12328092,12329474-12329601,12330249-12330474,
12332638-12332765,12332880-12333033,12333408-12333841
Length = 607
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 248 GSRGSRLRCLEMVQYHWCRREVVRWRC 168
G G LEM+ HW R+E+ + RC
Sbjct: 252 GRDGLTHNMLEMIHCHWRRQEICKVRC 278
>09_03_0009 + 11463049-11463063,11464136-11464492
Length = 123
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 296 SRRIERASSRACSSQTGSRGSRL 228
S R +SR+C+S +GSRG+R+
Sbjct: 33 SLRCRSKTSRSCTSTSGSRGARI 55
>04_03_0815 - 19949584-19950111,19950210-19950632
Length = 316
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = +1
Query: 271 ELARSIRREVAKLADKWNTLVDRSDAWGRCLDDAVQRVRAFTNSLDELASRVQAAEAARS 450
EL R+ R A+L +K + AW +LD+L + A AA +
Sbjct: 178 ELERARCRN-AELEEKLRQVSAEGQAWMGVAKSHEAVAAGLRATLDQLLLQSPCAAAAAA 236
Query: 451 SWRGPGDARDARA 489
+ G GDA DA +
Sbjct: 237 ASAGEGDAEDAHS 249
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/40 (42%), Positives = 18/40 (45%)
Frame = +1
Query: 73 PPEAAR*SSRLQETVGRQASSGGEQPPQRKAVHRQRTTSL 192
PP A S LQE ASS +PP R AV R L
Sbjct: 102 PPPGAHHSGSLQE-FAAPASSSATRPPPRAAVRADRPPPL 140
>02_01_0780 - 5818597-5819181
Length = 194
Score = 27.5 bits (58), Expect = 9.7
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Frame = +1
Query: 211 TISRQRRRLPRLPVCEEQARELARSIRREVAKLADKWNTL------VDRS---DAWGRCL 363
T+ + LP LP + R+L IRR + ++ DR+ AWG
Sbjct: 28 TLPTPDQPLPPLPPIVVRCRKLLDDIRRAAPRSHHRFQVASGALAEADRAIAAGAWGGLH 87
Query: 364 DDAVQRVRAFTNSLDELASRVQA--AEAARSSWRGPGDARDARAQLD 498
+ VRAF +LD L R +A A A R R GDA RA+++
Sbjct: 88 KPLLLVVRAF--ALDALGQRRRALRALAGRLPPRERGDALVKRAEIN 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,830,076
Number of Sequences: 37544
Number of extensions: 420295
Number of successful extensions: 1779
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1777
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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