Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1389
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.63 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   4.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 404 RELVKARTRCTASSKHLPHASLRSTRVFHLSASLATSRRIER 279
           REL+KA        K+L    +R  R  H+S S +    I R
Sbjct: 90  RELIKAAILANDFMKNLELTQIRRDRGLHVSCSFSAGSTIIR 131


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 610 WRNLDDLNTRSRC 648
           W + DD+NT+++C
Sbjct: 333 WGSSDDINTKAKC 345


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 377 SAYEPSPTLLTSSP-AESKQLKRPGLHGEDQATQE 478
           S+  PSP+LLTS P  +  + K    H  +Q T++
Sbjct: 40  SSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEK 74


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +1

Query: 55  EGRPHRPPEAAR*SSRLQETVGRQASSGGEQPPQRKAVHRQRT 183
           E + +R PE  R      + + +  +    QPP ++  H Q T
Sbjct: 778 ETQDYRIPEVMRRLMSEDKRLSKSVNGDQSQPPHQQLHHHQST 820


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = -1

Query: 516 LWLGHSIQLCPSVSCVAWSSP*RPGRFSCLDSAGELVKRVGEG 388
           +WL     L   +  +AW+S    G    L++  + + R+ +G
Sbjct: 5   MWLQQIFILLQMIHLIAWASLENTGISDRLENVTQTISRILDG 47


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 4    N*VGHQERDRIERSSTSEGRPHRPPEAAR*SSRLQETV 117
            N VG        R  T+EG P +PP     ++   +T+
Sbjct: 1061 NKVGSGPMSEERRQHTAEGVPEQPPHDTTCTTLTSQTI 1098


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -3

Query: 220 SRWFSITGVGERWFVGDVLPSAEEVALHHWTL 125
           S+W  +TG     FV D +     V+   W +
Sbjct: 90  SQWEDVTGSTPLTFVNDTVSFTTTVSARFWLM 121


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 47  APPRGDLTALLKQ 85
           AP RGDL  +LKQ
Sbjct: 561 APLRGDLVRILKQ 573


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 489 TTGCCVQARAQLPPLRRLA 545
           T   CV+A  + PPL R A
Sbjct: 407 TKPMCVEAFQEFPPLGRFA 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,122
Number of Sequences: 438
Number of extensions: 2995
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)