Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1389
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03620.1 68417.m00497 myosin heavy chain-related contains wea...    30   1.2  
At5g62370.1 68418.m07828 pentatricopeptide (PPR) repeat-containi...    29   2.0  
At1g43800.1 68414.m05046 acyl-[acyl-carrier-protein] desaturase,...    29   3.5  
At4g25260.1 68417.m03634 invertase/pectin methylesterase inhibit...    28   4.7  
At3g05900.1 68416.m00664 neurofilament protein-related similar t...    28   4.7  
At3g13280.1 68416.m01672 expressed protein contains Pfam profile...    28   6.1  
At5g55860.1 68418.m06963 expressed protein contains Pfam profile...    27   8.1  
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei...    27   8.1  
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p...    27   8.1  
At1g16380.1 68414.m01959 cation/proton exchanger, putative (CHX1...    27   8.1  

>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P24733 myosin heavy chain,
           striated muscle [Aequipecten irradians]
          Length = 342

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 334 DRSDAWGRCLDD-AVQRVRAFTNSLDELASRVQAAEAARSSWRGPGDARDARAQLDAVSK 510
           D ++A  R  DD  VQRV      LD+L +R+Q A+   SS  G  + R  R   D    
Sbjct: 86  DHNEATSRHHDDWKVQRVNTMMTILDDLKTRIQKAQQQSSS--GKKELR--RCYTDLKRS 141

Query: 511 PEL 519
           P+L
Sbjct: 142 PDL 144


>At5g62370.1 68418.m07828 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 982

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/45 (44%), Positives = 26/45 (57%)
 Frame = -1

Query: 444 GRFSCLDSAGELVKRVGEGSYALYSIIQAPAPRVAAVDQGVPLVS 310
           GR   LDSA E+++RV +GS    SI +A      AVD G+ L S
Sbjct: 54  GRRGLLDSAREVIRRVIDGS---SSISEAALVADFAVDNGIELDS 95


>At1g43800.1 68414.m05046 acyl-[acyl-carrier-protein] desaturase,
           putative / stearoyl-ACP desaturase, putative similar to
           Acyl-[acyl-carrier protein] desaturase from Lupinus
           luteus GI:4704824, Asclepias syriaca GI:1762436, Ricinus
           communis SP|P22337; contains Pfam profile PF03405 Fatty
           acid desaturase
          Length = 391

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/83 (25%), Positives = 36/83 (43%)
 Frame = +1

Query: 238 PRLPVCEEQARELARSIRREVAKLADKWNTLVDRSDAWGRCLDDAVQRVRAFTNSLDELA 417
           P LP  E    +  R +R   A L D++  ++          +DA+   +   N+LD + 
Sbjct: 94  PALPFSE--FTDQVRELRERTASLPDEYFVVL----VGDMITEDALPTYQTMINTLDGVR 147

Query: 418 SRVQAAEAARSSWRGPGDARDAR 486
               A+E+A +SW     A + R
Sbjct: 148 DETGASESAWASWTRAWTAEENR 170


>At4g25260.1 68417.m03634 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Phaseolus vulgaris SP|Q43111, Lycopersicon esculentum
           SP|Q43143, Arabidopsis thaliana SP|Q42534; contains Pfam
           profile PF04043: Plant invertase/pectin methylesterase
           inhibitor
          Length = 201

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/81 (24%), Positives = 37/81 (45%)
 Frame = +1

Query: 214 ISRQRRRLPRLPVCEEQARELARSIRREVAKLADKWNTLVDRSDAWGRCLDDAVQRVRAF 393
           I +Q R+L    +    AR  A+S +  V+++ D       + +A   CL++    V   
Sbjct: 62  IKKQPRKLAETALAVSIAR--AKSAKTYVSEMTDYKGITKRQHEAVADCLEEMGDTVDRL 119

Query: 394 TNSLDELASRVQAAEAARSSW 456
           +NSL EL   ++  ++    W
Sbjct: 120 SNSLKEL-KHLEEGDSGEDFW 139


>At3g05900.1 68416.m00664 neurofilament protein-related similar to
           NF-180 (GI:632549) [Petromyzon marinus] similar to
           Neurofilament triplet H protein (200 kDa neurofilament
           protein) (Neurofilament heavy polypeptide) (NF-H)
           (Swiss-Prot:P12036) [Homo sapiens]
          Length = 673

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = +2

Query: 20  RKETELNALAPPRGDLTALLKQQDDHRAFRRQLEDKRPVVESNLLSGRQYIANEPPLSDT 199
           +KETE +  +P   D+      ++ H       +D++     + LS  + +    P +  
Sbjct: 447 KKETEEDVSSP--ADIIEKAITEEKH-VVEEPSKDEKTSESGSALSPEKVV----PTNQD 499

Query: 200 SDTEPSRDSEGD 235
           SDTEP +++EGD
Sbjct: 500 SDTEPKKETEGD 511


>At3g13280.1 68416.m01672 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537; expression
           supported by MPSS
          Length = 383

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
 Frame = -2

Query: 392 KARTRCTASSKHLPHASLRSTRVFHLSAS-------LATSRRIERASSRACSSQTGSRGS 234
           K +T   A  +  P   ++S +V   SA+        + ++R  R S  +CSSQ     +
Sbjct: 313 KLKTEEAAVEEENPEKPIQSIQVQRSSATEQEDKPVSSVAKRASRKSISSCSSQDTILTN 372

Query: 233 RLRCLE 216
           RL+CLE
Sbjct: 373 RLKCLE 378


>At5g55860.1 68418.m06963 expressed protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827);
           expression supported by MPSS
          Length = 649

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +1

Query: 259 EQARELARSIR---REVAKLADKWNTLVDRSDAWGR-CLDDAVQRVRAFTNSLDELASRV 426
           E AR  A  +R   +E+ K A+  +  ++ S+   R  LD+A +   A T +L+++ S  
Sbjct: 400 EAARREAEGMRNKAKELMKEAESAHLALEDSELHLRVALDEAEEAKAAETKALEQIKSMS 459

Query: 427 QAAEAARSS 453
           +   AAR+S
Sbjct: 460 EKTNAARNS 468


>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 758

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +2

Query: 119 EDKRPVVESNLLSGRQYIAN---EPPLSDTSDTEPSRDSEGDSRGYRSVRN 262
           +  + ++ES++ S    IA     PP S+  DT  ++ S+ D +G RS +N
Sbjct: 221 QHNKEIMESSVRSLLSQIAKMSLRPPESNVHDTMQNQYSDRDGQGVRSFQN 271


>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF01480: PWI domain, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 899

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 22/95 (23%), Positives = 40/95 (42%)
 Frame = +1

Query: 220 RQRRRLPRLPVCEEQARELARSIRREVAKLADKWNTLVDRSDAWGRCLDDAVQRVRAFTN 399
           R+R +       +E+ +E  R  ++E+    ++     D    W R   D  +R R    
Sbjct: 487 REREKEKERQYEKEKEKEKERKRKKEIRYEEEEEEDDDDSRRRWHRAALDERRR-RQLRE 545

Query: 400 SLDELASRVQAAEAARSSWRGPGDARDARAQLDAV 504
             D+LA R++  E    + R   +    + QLDA+
Sbjct: 546 KEDDLADRLKEEEEVAEAKRSAEEQNLQQQQLDAL 580


>At1g16380.1 68414.m01959 cation/proton exchanger, putative (CHX1)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 785

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 621 QVSPVADLIAGFCLSLVSVLERV 553
           Q  PVA ++AG  LSL++++ +V
Sbjct: 45  QAGPVAQILAGIVLSLLTIIRKV 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,748,730
Number of Sequences: 28952
Number of extensions: 278839
Number of successful extensions: 1089
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)