Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1388
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    24   1.2  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   2.8  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   8.4  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.4  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 363 STEEEDERLKQRPADIDADVREMERRKR 446
           + EE+DE   ++PA +   V+E+  R R
Sbjct: 475 AVEEDDEDAIEKPAPVKISVQEVLNRVR 502


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 484 NWNGSSTSNAPGRRR 528
           +W G++ S +P RRR
Sbjct: 173 DWEGTTLSQSPNRRR 187


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 172 TNLNGDRNRH*ARNIIFVKTRTYCSLYNFYSTSLTDTACTG 50
           T LNG R+    +    +K + YCSL N  S +LT     G
Sbjct: 460 TELNGLRDFQEWKEKCDIKGQPYCSLPN--SCALTTRELPG 498


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 172 TNLNGDRNRH*ARNIIFVKTRTYCSLYNFYSTSLTDTACTG 50
           T LNG R+    +    +K + YCSL N  S +LT     G
Sbjct: 467 TELNGLRDFQEWKEKCDIKGQPYCSLPN--SCALTTRELPG 505


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,398
Number of Sequences: 336
Number of extensions: 3259
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)