Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1388
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    32   0.078
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    29   0.73 
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    28   1.3  
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    27   1.7  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   2.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.9  
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   6.8  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    25   6.8  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    25   6.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.0  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   9.0  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    25   9.0  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.9 bits (69), Expect = 0.078
 Identities = 24/62 (38%), Positives = 26/62 (41%)
 Frame = -2

Query: 402 PDAASSARLPPRWTGARCRSGSSLSPSQPFRQLESIDLSSKTWVSNPVAQSFRSHARSSR 223
           P + SSA LP   +     S SSLS S P        LSS T  S P   S  S   SS 
Sbjct: 141 PSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSA 200

Query: 222 WP 217
            P
Sbjct: 201 AP 202


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 13/59 (22%), Positives = 31/59 (52%)
 Frame = +3

Query: 369 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDQQCTRAATLPLLAE 545
           EE++E + +   D+  D + ME  +R+  + +++LF + + +   ++  +     LL E
Sbjct: 517 EEDEEDVDEDELDLMTDEQRMEEGRRMFQIFAARLFEQRVLQAYREKVAQQRQAKLLEE 575


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = +3

Query: 252 TVLPDY*PRSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREM 431
           TV P+Y P + +      + G  +TD  T P G GP  T   +      PA I     + 
Sbjct: 297 TVPPNYIPNTAMMGPSYSSFG--DTDPRTYPAGMGPNPTAARNGFYPPTPAQIHQLKAQQ 354

Query: 432 ERRKRVEALMS 464
           +  +R    MS
Sbjct: 355 QHLQRQSKQMS 365


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 360 LSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELER-VLDQQCT 515
           L T EE  R   +  +IDA +   ER       +  KL RE+LE  VL+ Q T
Sbjct: 263 LDTAEETLRSCIQGLNIDAKIVRKERSVGFVPSLGQKLRREQLEEAVLETQAT 315


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +3

Query: 360 LSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDQQCTRAATLPLL 539
           L    EDE++++ P D+D D  +         L   ++F +  E++        + LPLL
Sbjct: 663 LELGHEDEQVQKGPLDVDMDHSQ-------TPLFEMRVFHDRFEKIPTGWNMSVSNLPLL 715

Query: 540 AEDQRR 557
            E  ++
Sbjct: 716 TERDKK 721


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +3

Query: 360 LSTEEEDERLKQRPADIDADVREMER-----RKRVEALMSSKLFREELERVLDQQCTRAA 524
           L  EE ++ L ++  D+D+  + ++      RK  EAL  SKL  + L  V+D    +  
Sbjct: 668 LKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHE 727

Query: 525 TLPLLAED 548
           TL     D
Sbjct: 728 TLEAQRND 735


>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/66 (21%), Positives = 36/66 (54%)
 Frame = +3

Query: 309 VGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREEL 488
           +G  + +SE        +   E +E+L +R    + +++E+E+++++EA +     +E+ 
Sbjct: 84  LGKFQQESEREQKSARKVKRAELEEKLAKRR---EQELQELEKQEKIEAEILESRLQEQR 140

Query: 489 ERVLDQ 506
           +  LD+
Sbjct: 141 KVALDE 146


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 506 LVEDPFQFLAEQLRGHKSF-DALPAFHFADIGVDVGRTLLQAL 381
           +V+D FQ   E+L G  S+ D    FHF+DI +  G  +   L
Sbjct: 72  VVDDEFQH-TEELAGVSSWSDFFYLFHFSDIPLIFGTLIFTCL 113


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 402 ADIDADVREM--ERRKRVEALMSSKLFREELERVLDQQCTRAATLPL-LAEDQRRWSAGE 572
           A +  D+ E+  +R  +V     +K   +++ R L Q    A  +    A+D+R W   E
Sbjct: 355 ARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNE 414

Query: 573 LHTGK 587
             TGK
Sbjct: 415 FRTGK 419


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 403 PTSTPMSAKWNAGSASKLLCPRSCSARNWNGSSTSNAP 516
           P S P      + S S  + PRS S  N+  S+TSN P
Sbjct: 198 PASFPSKETLTSSSLSSSV-PRSVSLSNFADSNTSNYP 234


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 20/77 (25%), Positives = 27/77 (35%)
 Frame = -2

Query: 492  VPIPRGTASRT*ELRRASGVPFRGHRRRCRPDAASSARLPPRWTGARCRSGSSLSPSQPF 313
            +P P  TAS T      +  P         P  AS  R+PP    +     + ++P  P 
Sbjct: 907  LPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAPQSPV 966

Query: 312  RQLESIDLSSKTWVSNP 262
                 I  S     SNP
Sbjct: 967  AAASRISSSPNMPPSNP 983


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -2

Query: 567 PPTISFDPLQEAEASPPWCIAGRG-PVPIPRGTASRT 460
           PP +S         +PP  I GR  P   P G ASRT
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRT 412


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 199 DDHYTQNSHTNLNGDRNRH 143
           DDH +Q+ HT+ N   + H
Sbjct: 524 DDHVSQHEHTHENSQEHHH 542


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 372 PRWTGARCRSGSSLSPSQPFRQ 307
           PRWT A+C   S  SP  P +Q
Sbjct: 57  PRWTQAKCEI-SLTSPFHPIKQ 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,786
Number of Sequences: 5004
Number of extensions: 52026
Number of successful extensions: 173
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)