Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1388
(628 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 23 1.8
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 23 1.8
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 2.4
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 2.4
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 23 2.4
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 4.3
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 4.3
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 22 5.6
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 21 7.4
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 21 7.4
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 21 7.4
AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter... 21 7.4
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 23.4 bits (48), Expect = 1.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -2
Query: 576 AVLPPTISFDPLQEAEASPPWCIAGRGPVPIPR 478
A+LPPT D + I G G VP+ R
Sbjct: 177 AILPPTRPTDKALRLPLQDVYKIGGIGTVPVGR 209
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -2
Query: 576 AVLPPTISFDPLQEAEASPPWCIAGRGPVPIPR 478
A+LPPT D + I G G VP+ R
Sbjct: 234 AILPPTRPTDKALRLPLQDVYKIGGIGTVPVGR 266
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.0 bits (47), Expect = 2.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 450 EALMSSKLFREELERVLDQQCTRAATLPLLAEDQR 554
E L +K+ +EE+ +LD+ R + + L +R
Sbjct: 438 EVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKR 472
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 23.0 bits (47), Expect = 2.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 414 RRCRPDAASSARLPPRWTG---ARCRSGSSLSPSQPFRQL 304
RR RP AS+ ++ A C SGSSL+ S+ R L
Sbjct: 112 RRHRPVCASNGKIYANHCELHRAACHSGSSLTKSRLMRCL 151
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 23.0 bits (47), Expect = 2.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 450 EALMSSKLFREELERVLDQQCTRAATLPLLAEDQR 554
E L +K+ +EE+ +LD+ R + + L +R
Sbjct: 144 EVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKR 178
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 4.3
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -1
Query: 139 ARNIIFVKTRTYCSLYN 89
AR + V+ TYC+L++
Sbjct: 529 ARRVASVRAETYCNLFS 545
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.2 bits (45), Expect = 4.3
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -1
Query: 139 ARNIIFVKTRTYCSLYN 89
AR + V+ TYC+L++
Sbjct: 497 ARRVASVRAETYCNLFS 513
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.6
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -2
Query: 576 AVLPPTISFDPLQEAEASPPWCIAGRGPVPIPR 478
A+LPP+ D + I G G VP+ R
Sbjct: 234 AILPPSRPTDKALRLPLQDVYKIGGIGTVPVGR 266
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 21.4 bits (43), Expect = 7.4
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +2
Query: 356 APVHRGGRRALEAASGRHRRRCPRNGTPEARRSSYVLEAVPR 481
AP GRR A R CP+ E R+ VL + R
Sbjct: 59 APCDPVGRRLKSLAPLVLRGACPQCSPEETRQIKKVLSHIQR 100
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 21.4 bits (43), Expect = 7.4
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = +2
Query: 422 PRNGTPEARRSSYVLEAVPRGIGTGPRPAMHQGGDASASCRGSKEMVGGRTAHRKASXVL 601
P TP +S + + G+G R +++ AS K RKA+ L
Sbjct: 566 PLARTPSVMSASSTCKKDKKNAGSGSRFTIYKANKASK----KKREKSSAKKERKATKTL 621
Query: 602 ACVL 613
A VL
Sbjct: 622 AIVL 625
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 21.4 bits (43), Expect = 7.4
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +2
Query: 356 APVHRGGRRALEAASGRHRRRCPRNGTPEARRSSYVLEAVPR 481
AP GRR A R CP+ E R+ VL + R
Sbjct: 59 APCDPVGRRLKSLAPLVLRGACPQCSPEETRQIKKVLSHIQR 100
>AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter
Am-EAAT protein.
Length = 543
Score = 21.4 bits (43), Expect = 7.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 111 ALIVLFIIFTALA*QTPHVQALF 43
ALI + I+ TAL T + LF
Sbjct: 445 ALITMLIVLTALGLPTNDISLLF 467
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,009
Number of Sequences: 438
Number of extensions: 4120
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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