Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1388
(628 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49160.2 68414.m05512 protein kinase family protein contains ... 36 0.017
At1g49160.1 68414.m05511 protein kinase family protein contains ... 36 0.017
At2g40480.1 68415.m04996 expressed protein contains Pfam profile... 33 0.21
At3g18750.1 68416.m02380 protein kinase family protein contains ... 31 0.47
At1g23460.1 68414.m02939 polygalacturonase, putative / pectinase... 31 0.83
At2g32360.1 68415.m03955 ubiquitin family protein contains INTER... 30 1.1
At1g04150.1 68414.m00405 C2 domain-containing protein contains I... 30 1.1
At5g15890.1 68418.m01859 expressed protein 30 1.4
At3g56270.1 68416.m06253 expressed protein contains Pfam PF05701... 30 1.4
At1g68790.1 68414.m07863 expressed protein 30 1.4
At1g10890.1 68414.m01251 F-box family protein contains Pfam PF00... 30 1.4
At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co... 29 1.9
At4g35590.1 68417.m05056 RWP-RK domain-containing protein low si... 29 2.5
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 29 3.3
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 29 3.3
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 29 3.3
At1g27580.1 68414.m03361 F-box family protein similar to F-box p... 29 3.3
At1g27540.1 68414.m03357 F-box family protein similar to F-box p... 29 3.3
At3g21350.1 68416.m02696 RNA polymerase transcriptional regulati... 28 4.4
At5g61560.1 68418.m07725 protein kinase family protein contains ... 28 5.8
At3g52900.1 68416.m05830 expressed protein contains Pfam profile... 28 5.8
At3g51860.1 68416.m05687 cation exchanger, putative (CAX3) simil... 28 5.8
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin... 28 5.8
At3g01680.1 68416.m00099 expressed protein 28 5.8
At2g40935.1 68415.m05053 expressed protein low similarity to PGP... 28 5.8
At2g14170.1 68415.m01578 methylmalonate-semialdehyde dehydrogena... 28 5.8
At1g27100.1 68414.m03303 expressed protein contains Pfam profil... 28 5.8
At5g22090.1 68418.m02572 expressed protein 27 7.7
At4g08580.1 68417.m01410 microfibrillar-associated protein-relat... 27 7.7
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 27 7.7
At1g69060.1 68414.m07902 expressed protein 27 7.7
>At1g49160.2 68414.m05512 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 557
Score = 36.3 bits (80), Expect = 0.017
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +3
Query: 264 DY*PRSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMER-- 437
DY PRS ++ V D E G L EEEDERLK+ I+ RE +
Sbjct: 478 DYCPRS--DDEANPTVAATTEDQEA--EKPGSLEEEEEDERLKEELEKIEERFREEMKEI 533
Query: 438 -RKRVEALMSSK--LFREELERV 497
RKR EA M +K F +++++V
Sbjct: 534 TRKREEATMETKNRFFEKKMQQV 556
>At1g49160.1 68414.m05511 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 539
Score = 36.3 bits (80), Expect = 0.017
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +3
Query: 264 DY*PRSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMER-- 437
DY PRS ++ V D E G L EEEDERLK+ I+ RE +
Sbjct: 460 DYCPRS--DDEANPTVAATTEDQEA--EKPGSLEEEEEDERLKEELEKIEERFREEMKEI 515
Query: 438 -RKRVEALMSSK--LFREELERV 497
RKR EA M +K F +++++V
Sbjct: 516 TRKREEATMETKNRFFEKKMQQV 538
>At2g40480.1 68415.m04996 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 541
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = +3
Query: 369 EEEDERLKQRPADIDAD--VREMERRKRVEALMSSKLFREELERVLDQQCTRAA 524
E + +R+++ A+++ D V+E+E +EAL S+K E+L+R L Q+ R +
Sbjct: 116 EFDIKRMEEHAAELEKDLIVKELETLDVLEALGSTKRIVEDLKRQLQQEALRCS 169
>At3g18750.1 68416.m02380 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 567
Score = 31.5 bits (68), Expect = 0.47
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +3
Query: 312 GMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMERR---KRVEALMSSK 470
G ++ + + T P+S EEE ERL+Q +I+A +E + KR EA+M +K
Sbjct: 504 GEDKSSIQEVEEATEPVSLEEE-ERLRQELEEIEAKYQEDMKEIATKREEAIMETK 558
>At1g23460.1 68414.m02939 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase GB:BAA88472
GI:6624205 from (Cucumis sativus); contains Pfam profile
PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 459
Score = 30.7 bits (66), Expect = 0.83
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 215 PGHLLDRA*LLKDCATGLLTQVLLDKSIDSSCRNG 319
PGH + L KD TG++TQV+LD ++ NG
Sbjct: 282 PGHGISIGSLGKDNTTGIVTQVVLDTALLRETTNG 316
>At2g32360.1 68415.m03955 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 175
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3
Query: 369 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERV 497
EEED+ +K D D V E E K E +K +EE V
Sbjct: 124 EEEDQAMKDEEEDRDVKVEEDEEEKEKEKDGEAKYVKEEAREV 166
>At1g04150.1 68414.m00405 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1012
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 365 HRGGRRALEAASGRHRRRCPRNGTPEARRSSYVLEAVPRGI-GTGPRPAMHQGGDASASC 541
H G + +G+ +R P ++ V+ A+P + G GPRP ++ G + S
Sbjct: 186 HNRGNQQQSQQNGQGQRMLPFY-PHQSEIKPLVITALPSPMPGPGPRPIVYSNGSSEFSL 244
Query: 542 RGSKEMVGG 568
+ +K +GG
Sbjct: 245 KETKPCLGG 253
>At5g15890.1 68418.m01859 expressed protein
Length = 526
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +1
Query: 349 APGPCPPRRKTSA*SSVRPTSTPMSAKWNAGSASKLLCPRSCSARNWNGSSTSNAPGRRR 528
+P P PP R +SA S P + P+ A N S L S+ + + S + +P R R
Sbjct: 125 SPVPAPPHRNSSADQSPSPVNGPIPAPLNHTSLRHL-----NSSSDDHSSPVTTSPSRTR 179
Query: 529 FR 534
R
Sbjct: 180 IR 181
>At3g56270.1 68416.m06253 expressed protein contains Pfam PF05701:
Plant protein of unknown function (DUF827)
Length = 446
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 369 EEEDERLKQRPADIDADV--REMERRKRVEALMSSKLFREELERVLDQQCTRAATLP 533
E + +R++++ +++ D+ +E+E +EAL S+K E+L+ L QQ R P
Sbjct: 72 EFDIKRMEEQTVELEKDLIMKELETLDLLEALGSTKRIFEDLKWQLQQQALRCKETP 128
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/50 (24%), Positives = 29/50 (58%)
Frame = +3
Query: 369 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDQQCTR 518
E+++E +K++ D+DA ++ ++ +++ KL E + D++C R
Sbjct: 411 EKKEEGVKKKEKDLDARLKTVKEKEKALKAEEKKLHMENERLLEDKECLR 460
>At1g10890.1 68414.m01251 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 592
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = +3
Query: 333 ETIPNGTGPLSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDQQC 512
E+ N G EE+ER K+R + + + E E KRVE + R+++E L +
Sbjct: 53 ESAKNRNGEKLKREEEER-KRRQREAELKLIEEETVKRVEEAI-----RKKVEESLQSEK 106
Query: 513 TRAATLPLLAEDQRR 557
+ L LL E ++R
Sbjct: 107 IKMEILTLLEEGRKR 121
>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 587
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 315 MAETDSETIPNGTGPLSTEEEDERLKQRPAD 407
MAE D + T P + EEEDE +++P D
Sbjct: 70 MAEGDDDQAEEETNPEAEEEEDEEEEEKPDD 100
>At4g35590.1 68417.m05056 RWP-RK domain-containing protein low
similarity to minus dominance protein [Chlamydomonas
reinhardtii] GI:1928929; contains Pfam profile: PF02042
RWP-RK domain
Length = 370
Score = 29.1 bits (62), Expect = 2.5
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +3
Query: 273 PRSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMERRKRVE 452
PR + Q + +ET+SE N S E D K ++ DA ++++KR
Sbjct: 179 PRKLVLKQDLNCLPDSETESEESVNEKTEHSEFEND---KTEQSESDAKTEILKKKKRTP 235
Query: 453 ALMSSKLFREELERVLDQQCTRAA 524
+ ++L EEL + D A+
Sbjct: 236 SRHVAELSLEELSKYFDLTIVEAS 259
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 487 WNGSSTSNAPGRRRFRFLQRIKGDGRRENCTPESLXGPSLRSC 615
WN S S RR+F ++ +GR E T +S+ G S+ SC
Sbjct: 32 WNDSPGSVVERRRKFLEWMGVEEEGRVE--TKDSVSGSSVESC 72
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 28.7 bits (61), Expect = 3.3
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 351 TGPLSTEEEDERLKQRPADIDADVREMER--RKRVEALMSSKLFREELERVLDQQCTRAA 524
T PL +++D + K I VREM+ +R EA K EE R +++ R
Sbjct: 390 TEPLQPKKKDAKGKAAEKKIPKHVREMQEALARRQEAEERKKKEEEEKLRKEEEERRRQE 449
Query: 525 TLPLLAEDQRR 557
L AE+ +R
Sbjct: 450 ELEAQAEEAKR 460
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 28.7 bits (61), Expect = 3.3
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 351 TGPLSTEEEDERLKQRPADIDADVREMER--RKRVEALMSSKLFREELERVLDQQCTRAA 524
T PL +++D + K I VREM+ +R EA K EE R +++ R
Sbjct: 343 TEPLQPKKKDAKGKAAEKKIPKHVREMQEALARRQEAEERKKKEEEEKLRKEEEERRRQE 402
Query: 525 TLPLLAEDQRR 557
L AE+ +R
Sbjct: 403 ELEAQAEEAKR 413
>At1g27580.1 68414.m03361 F-box family protein similar to F-box
protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]; confirmed by FLcDNA GI:16604421; contains
uncharacterized Arabidoppsis domain shared by 33
Arabidopsis proteins;simlar to unknown protein
GB:AAC63676
Length = 364
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +2
Query: 323 DGLRDDPERHRAPVHRGGRRALEAASGRHRRRCPRNGTPEARRSSYVLEAVPRGIGT 493
DG +D E+HR P+ E + +R P N R+ VL +GT
Sbjct: 202 DGFKDVSEKHRLPMWMPSMTMKERERMKQKRSIPSNKGIAVTRAGQVLVVFTYDLGT 258
>At1g27540.1 68414.m03357 F-box family protein similar to F-box
protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]; confirmed by FLcDNA GI:16604421; contains
uncharacterized Arabidoppsis domain shared by 33
Arabidopsis proteins
Length = 413
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +2
Query: 323 DGLRDDPERHRAPVHRGGRRALEAASGRHRRRCPRNGTPEARRSSYVLEAVPRGIGT 493
DG +D E+HR P+ E + +R P N R+ VL +GT
Sbjct: 251 DGFKDVSEKHRLPMWMPSMTMKERERMKQKRSIPSNKGIAVTRAGQVLVVFTYDLGT 307
>At3g21350.1 68416.m02696 RNA polymerase transcriptional regulation
mediator-related contains weak similarity to RNA
polymerase transcriptional regulation mediator, subunit
6 homolog (Activator-recruited cofactor 33 kDa
component) (ARC33) (NY-REN-28 antigen)
(Swiss-Prot:O75586) [Homo sapiens]
Length = 257
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +3
Query: 309 VGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFRE 482
+ A TD+ + + TE ++E + +PA D++EM KRV+ +++S L+R+
Sbjct: 152 ISKAFTDAASKLETIRQVDTENQNEPAESKPASETVDLKEM---KRVDVILTS-LYRK 205
>At5g61560.1 68418.m07725 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 796
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +3
Query: 372 EEDERLKQ---RPADIDADVREMERRKRVEALMSSKLFREELERVLDQQCTRAATLPLLA 542
EE RLK R + D +V EMER ++ +A ++L RE +ER +++ A +
Sbjct: 336 EEATRLKNLTIREEEAD-EVVEMERERQEDAENEAELVRECIERETEERLEAEARAEEVR 394
Query: 543 EDQRR 557
++++R
Sbjct: 395 KEKQR 399
>At3g52900.1 68416.m05830 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 164
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 345 NGTGPLSTEEEDERLKQRPADIDADVREMERRK-RVEALMSSKL-FREELERVLDQ 506
NG P+ EE+E K A E+ER+K V+ + +L F EE R L Q
Sbjct: 18 NGKLPMEDNEEEEIWKVAVTRFQAREEEIERKKMTVKEKVQQRLGFAEEATRCLTQ 73
>At3g51860.1 68416.m05687 cation exchanger, putative (CAX3) similar
to high affinity calcium antiporter CAX1 [Arabidopsis
thaliana] gi|9256741|gb|AAB05913; Ca2+:Cation Antiporter
(CaCA) Family member PMID:11500563; non-consensus
AT-acceptor splice site at intron 1
Length = 459
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 497 PRPAMHQGGDASASCRGS-KEMVGGRTAHRKASXVL 601
P A+ + G+A+ + +GS +E+ GRTAH +S L
Sbjct: 7 PWAAIAENGNANVTAKGSSRELRHGRTAHNMSSSSL 42
>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
[Arabidopsis thaliana] GI:6491702; similar to myosin
GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
profiles: PF00063: myosin head (motor domain), PF00612:
IQ calmodulin-binding motif; identical to cDNA myosin
(ATM) GI:297068
Length = 1166
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 471 LFREELERVLDQQCTRAATLPLLAEDQRRWS 563
+F EE + + D + AAT+PL D+RRWS
Sbjct: 75 VFVEE-QSLTDDVDSGAATMPLPQSDERRWS 104
>At3g01680.1 68416.m00099 expressed protein
Length = 740
Score = 27.9 bits (59), Expect = 5.8
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 333 ETIPNGTGPLSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERV-LDQQ 509
E IP TG + +E LK D RE++ V L+S L + L+R LD +
Sbjct: 27 EMIP-ATGLAMSSDESMMLKLIQQTHSPDAREVQ----VRGLLS--LVEDILDRATLDSE 79
Query: 510 CTRAATLPLLAEDQ 551
T A+ LPL ED+
Sbjct: 80 DTNASMLPLPTEDK 93
>At2g40935.1 68415.m05053 expressed protein low similarity to
PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
profile PF04749: Protein of unknown function, DUF614
Length = 190
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Frame = +1
Query: 139 LSACYDRRSNLCVNFVCSDHLICRYA-----GPSAGPCMT 243
+ AC+D + CV C ++ + A G AGPC+T
Sbjct: 51 ICACFDDMQSCCVGLFCPCYIFGKNAELLGSGTFAGPCLT 90
>At2g14170.1 68415.m01578 methylmalonate-semialdehyde dehydrogenase,
putative similar to methylmalonate-semialdehyde
dehydrogenase [acylating], mitochondrial precursor
(MMSDH) [Rattus norvegicus] SWISS-PROT:Q02253
Length = 607
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 487 WNGSSTSNAPGRRRFRFLQRIKGDGRRENCTPESLXGPSLRSCRSTT 627
W +TS AP + R +K +R E+ LRS STT
Sbjct: 22 WRNPTTSFAPDQHRVSIHSSLKSKTKRRRLYKEADDNTKLRSSSSTT 68
>At1g27100.1 68414.m03303 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 519
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 328 TQRRSRTAPGPCPPRRKTSA*SSVRPTSTPMSAKWNAGSAS 450
T +T PP + TS RPTS+P+SA+ S+S
Sbjct: 377 TDSEFKTESAKAPPPKTTSPPPHRRPTSSPLSAESPRTSSS 417
>At5g22090.1 68418.m02572 expressed protein
Length = 463
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 339 SSLSPSQPFRQLESIDLSSKTWVS 268
S+ S + R+ S DLSSKTWVS
Sbjct: 31 SNTSSAPSLRRTFSADLSSKTWVS 54
>At4g08580.1 68417.m01410 microfibrillar-associated protein-related
similar to Microfibrillar-associated protein 1
(Associated microfibril protein) (AMF)
(Swiss-Prot:P55080) [Gallus gallus]
Length = 435
Score = 27.5 bits (58), Expect = 7.7
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 360 LSTEEEDERLKQ-RPADIDADVREMERRKRVEALMSSKLFREELERVLDQQCTRAATLPL 536
+STEEE+ R ++ R D D D E ERR+R++ + L R ++ AA LPL
Sbjct: 103 ISTEEEESRNQENRDEDDDEDALE-ERRRRIK--------EKNLRRAQEE----AALLPL 149
Query: 537 LAEDQ 551
ED+
Sbjct: 150 EEEDE 154
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = +2
Query: 332 RDDPERHRAPVHRGGRRALEAASGRHRRRCP-----RNGTPEARR 451
R RHR P H GRR A S R R P R+ +P ARR
Sbjct: 286 RSPIRRHRRPTHE-GRRQSPAPSRRRRSPSPPARRRRSPSPPARR 329
Score = 27.5 bits (58), Expect = 7.7
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +2
Query: 341 PERHRAP--VHRGGRRALEAASG--RHRRRCPRNG-TPEARRSSYVLEAVPRGIGTGPRP 505
P R R+P V+R RR+ A+ R RRR P + +P RS VL P PR
Sbjct: 580 PVRRRSPTPVNRRSRRSSSASRSPDRRRRRSPSSSRSPSRSRSPPVLHRSP-----SPRG 634
Query: 506 AMHQ 517
HQ
Sbjct: 635 RKHQ 638
>At1g69060.1 68414.m07902 expressed protein
Length = 630
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 369 EEEDERLKQRPADIDADVREMER-RKRVEALMSSKLFREELERV 497
+EE+ +QR I AD + +R R+++E + ++ R + ERV
Sbjct: 480 QEEEWESRQRQLQIQADEAQKQRKRRKLENMRKLEMERRQKERV 523
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,747,807
Number of Sequences: 28952
Number of extensions: 309954
Number of successful extensions: 1180
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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