Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1387
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0015 + 15431648-15431796,15431878-15432061,15435370-154354...    30   1.4  

>06_03_0015 +
           15431648-15431796,15431878-15432061,15435370-15435455,
           15436863-15436957,15437614-15437689,15438073-15438185,
           15439849-15439955,15440227-15440400,15440691-15440915
          Length = 402

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 358 MQYFIRLRRRRVDDYMHIIDSWTDAEFKNRMRLSKKNSISSYWWN 492
           M Y+I  + +R   +  + D+WT++E +  + L  K+SIS+ W N
Sbjct: 209 MPYYIHFQDQRPLVFAALFDTWTNSEDRMPVILGDKDSIST-WLN 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,256,543
Number of Sequences: 37544
Number of extensions: 206024
Number of successful extensions: 341
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)