Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1387
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)         29   2.5  
SB_25241| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-09)          29   3.3  
SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)          29   3.3  
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)                  28   5.8  

>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
          Length = 2435

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/68 (27%), Positives = 37/68 (54%)
 Frame = -3

Query: 341  FIVLIIRPLNF*RVSLDIRYMTETVCITVSVLIKKLLVSASQIIWLFLIIFQHSQLVNNK 162
            FI++II  +    + L I   T T+ IT+ ++I  +++    II +F+++  + QL   K
Sbjct: 1610 FIIIIILIIIIILILLTI---TITITITIIIIIIIIIIIIIIIIIVFIVVIINFQLKTAK 1666

Query: 161  FLLKILGI 138
            FL  +  +
Sbjct: 1667 FLTFVFAV 1674


>SB_25241| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-09)
          Length = 344

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 298 ETLQKLSGLMMRTMKFFFPPMQYFIRLRRRRVDDYMHIIDSWTDAEFKNRM-RLSKKNSI 474
           +T +  S L +R+   +FP     + ++ RR+ D   +I S  D   K +  RL   ++ 
Sbjct: 192 DTKRVYSALPIRSYFHYFPECSSALGMQDRRITDLQLMISSQYDKNAKAKSGRLHHVSTF 251

Query: 475 SSYWWNWTKSRT 510
           ++ W  W    T
Sbjct: 252 NADWGAWIAKYT 263


>SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)
          Length = 428

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 298 ETLQKLSGLMMRTMKFFFPPMQYFIRLRRRRVDDYMHIIDSWTDAEFKNRM-RLSKKNSI 474
           +T +  S L +R+   +FP     + ++ RR+ D   +I S  D   K +  RL   ++ 
Sbjct: 192 DTKRVYSALPIRSYFHYFPECSSALGMQDRRITDLQLMISSQYDKNAKAKSGRLHHVSTF 251

Query: 475 SSYWWNWTKSRT 510
           ++ W  W    T
Sbjct: 252 NADWGAWIAKYT 263


>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3610

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -3

Query: 299  SLDIRYMTETVCITVSVLIKKLLVSASQIIWLFLIIF 189
            S DI Y+T+ V ITV++    ++V    +I +F+I+F
Sbjct: 2830 STDI-YITDVVAITVTITFVLVIVEFVIVIIIFIIVF 2865


>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
          Length = 841

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/44 (36%), Positives = 29/44 (65%)
 Frame = -1

Query: 223 QAKLFGCF*SFFNILNL*TINFSLKFSV*VIYSNIICSSLFIHC 92
           +++L  C  ++F IL+L   +FS+ F +  I S+++CS L +HC
Sbjct: 137 RSRLRNCTGNWF-ILSLSIADFSVGFLL--IPSHVVCSLLLLHC 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,028,599
Number of Sequences: 59808
Number of extensions: 262340
Number of successful extensions: 421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)