Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1387
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical
           protein F28G4.3 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +1

Query: 313 LSGLMMRTMKFFFPPMQYFIRLRRRRVDDYMHIIDSWTDAEFKNRMRLSKKNSISSYWW 489
           L+ L ++T+K  F      I +R+   D+Y   +++W++  FK  +         + WW
Sbjct: 143 LTELNIKTLKAKFKD----IEIRKFNTDEYPKYVNNWSEYRFKPLIVAQALKEFPNIWW 197


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 391 VDDYMHI-IDSWTDAEFKNRMRLSKKNSISSYWWNWTKSRTLLRIK 525
           +DD  HI +++W D  F++R++   + +      NWT S  + + K
Sbjct: 315 LDDQFHIAMENW-DVHFQSRLKAQARANRKPLSANWTSSTLITKFK 359


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 391 VDDYMHI-IDSWTDAEFKNRMRLSKKNSISSYWWNWTKSRTLLRIK 525
           +DD  HI +++W D  F++R++   + +      NWT S  + + K
Sbjct: 315 LDDQFHIAMENW-DVHFQSRLKAQARANRKPLSANWTSSTLITKFK 359


>Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical
           protein F36G3.1 protein.
          Length = 964

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 174 KLRMLKND*KQPNNLACRNQQLFN*HRDSDTDS 272
           K+  L+N+ ++ + L C+  Q+ N HR S T S
Sbjct: 848 KVLHLENELRERDMLICKQNQIINSHRKSPTGS 880


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,625,881
Number of Sequences: 27780
Number of extensions: 221579
Number of successful extensions: 469
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)