Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1386
         (212 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   1.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   1.1  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   1.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   1.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    19   4.3  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    19   4.3  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    19   4.3  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    19   4.3  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    19   4.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    19   5.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    19   5.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    19   5.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    19   5.7  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    19   5.7  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    19   5.7  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    19   7.5  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 97  KIKRSCWTWLLVF 59
           +++R  W WLL+F
Sbjct: 115 EVERVQWIWLLIF 127


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 97  KIKRSCWTWLLVF 59
           +++R  W WLL+F
Sbjct: 115 EVERVQWIWLLIF 127


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 111 CTGVGK*NEAVGRGYLCSSKISTEVAINKEH 19
           C G  K +    R Y+C +K      I+K H
Sbjct: 58  CAGFFKRSIRRNRQYVCKAKDEGSCIIDKTH 88


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 111 CTGVGK*NEAVGRGYLCSSKISTEVAINKEH 19
           C G  K +    R Y+C +K      I+K H
Sbjct: 58  CAGFFKRSIRRNRQYVCKAKDEGSCIIDKTH 88


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -2

Query: 124 ALVMVHRCRKIKRSCWTWLLVFLQ 53
           AL  + RCR +      W L+  Q
Sbjct: 676 ALKFLSRCRLLSERLTRWTLILGQ 699


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +3

Query: 9   QKNGALYLLRLQWIFWRNTSNHVQQLR 89
           Q+N   ++  LQ I W      +  LR
Sbjct: 440 QRNDVYFVTNLQVIQWMQNPTELNGLR 466


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +3

Query: 9   QKNGALYLLRLQWIFWRNTSNHVQQLR 89
           Q+N   ++  LQ I W      +  LR
Sbjct: 447 QRNDVYFVTNLQVIQWMQNPTELNGLR 473


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +3

Query: 75  VQQLRFIFRH---LCTITNAKQIISHHYYTPKA 164
           V++LR  F+    L T+T    + S  YY P+A
Sbjct: 201 VRELRGAFKAENLLVTLTVLPNVNSTVYYDPRA 233


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 54  WRNTSNHVQQLRFIFR 101
           WR  +N+ QQ+  IF+
Sbjct: 104 WRLLNNNFQQIDKIFK 119


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = -2

Query: 91  KRSCWTWLLVF 59
           +R  W W L+F
Sbjct: 127 ERVAWMWCLIF 137


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = -2

Query: 91  KRSCWTWLLVF 59
           +R  W W L+F
Sbjct: 127 ERVAWMWCLIF 137


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = -2

Query: 91  KRSCWTWLLVF 59
           +R  W W L+F
Sbjct: 127 ERVAWMWCLIF 137


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = -2

Query: 91  KRSCWTWLLVF 59
           +R  W W L+F
Sbjct: 127 ERVAWMWCLIF 137


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 167 VSFRRVIMVAYYLFSIGN 114
           VSF   I   +Y F+ GN
Sbjct: 237 VSFYFFISTFFYFFTTGN 254


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 167 VSFRRVIMVAYYLFSIGN 114
           VSF   I   +Y F+ GN
Sbjct: 233 VSFYFFISTFFYFFTTGN 250


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 138 SHHYYTPKADETLI*ENKTNYLTS 209
           SH+YY      T   + + +YL S
Sbjct: 297 SHNYYAQNYAPTYYGQMQPDYLNS 320


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,410
Number of Sequences: 336
Number of extensions: 913
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 45
effective length of database: 107,465
effective search space used:  2686625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)