Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1386
         (212 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    23   4.2  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    23   4.2  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    23   4.2  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    23   4.2  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    23   5.5  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    23   7.3  
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    23   7.3  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    23   7.3  
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar...    23   7.3  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    22   9.6  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    22   9.6  

>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 152 VIMVAYYLFSIGNGAQVSENKTKLLD 75
           V+++AYYLF++   A+  +N   LL+
Sbjct: 453 VLVIAYYLFNLFEVAREVKNLLLLLE 478


>SPBC428.08c |clr4||histone H3 methyltransferase
          Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 3  KTQKNGALYLLRLQWIFWRNTSN 71
          K  +NGA+ L R++W+ + + S+
Sbjct: 17 KLDRNGAVKLYRIRWLNYSSRSD 39


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 123 HW*WCTGVGK*NEAVGRGYLCSSKISTE 40
           HW W    GK  E   + Y C +  STE
Sbjct: 130 HWEWSPPSGKLLEYECKNYSCIAVYSTE 157


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 73  TSNSFVLFSDTCAPLPM 123
           TSN FV+ +D C   P+
Sbjct: 109 TSNVFVMHADVCCSFPL 125


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 5   NSEKWCSLFIATSVDILEEH 64
           N+ KW S F    VD LEE+
Sbjct: 629 NTVKWASEFFHQWVDFLEEN 648


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 96  FRHLCTITNAKQIISHH 146
           FR+ C I  +KQI ++H
Sbjct: 239 FRNFCKIDASKQITNYH 255


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 76  SNSFVLFSDTCAPLPM 123
           S S V++ +TC P+PM
Sbjct: 71  SGSRVIWVETCQPIPM 86


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 110  AQVSENKTKLLDVVTCVPPKYPLK 39
            A+   NK+KLLD+   + P + L+
Sbjct: 1261 AEPINNKSKLLDLTPLLTPAFTLR 1284


>SPBC1604.16c |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 133 ICLALVMVHRCRKIKRSC 80
           I L  V V++CRK KR C
Sbjct: 161 IDLEKVAVNKCRKGKRQC 178


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 31  YCDFSGYFGG 60
           +CD S YFGG
Sbjct: 244 FCDLSRYFGG 253


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 143 VAYYLFSIGNGAQVSENKTKLLDV 72
           VA+ L   GN   +S+N ++LLD+
Sbjct: 42  VAFELDFSGNFQFISDNSSELLDI 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 862,897
Number of Sequences: 5004
Number of extensions: 14204
Number of successful extensions: 32
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)