Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1386
         (212 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0030 + 12510095-12510320,12510646-12510980,12511058-12511396     29   0.39 
06_03_1063 - 27297755-27298748,27298791-27298834                       27   2.7  
06_02_0011 - 10569471-10572245                                         27   2.7  
05_04_0220 - 19167485-19169290                                         27   2.7  
12_02_1279 + 27510605-27513301                                         25   6.3  
10_08_0056 + 14511651-14512775                                         25   8.3  
03_02_0945 - 12614658-12614909,12615200-12615325,12616684-126168...    25   8.3  

>11_04_0030 + 12510095-12510320,12510646-12510980,12511058-12511396
          Length = 299

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 49  YFGGTQVTTSNSFVLFSDTCAPLPM 123
           ++GG  + TS  F ++ DTC  LPM
Sbjct: 62  FYGGFSLPTSRFFRVYQDTCNSLPM 86


>06_03_1063 - 27297755-27298748,27298791-27298834
          Length = 345

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 133 ICLALVMVHRCRKIKRSCWTWLLVFLQNIH 44
           + LAL   H C K+K  C  ++L   +N H
Sbjct: 281 MALALAERHGCTKLKARCIEFILASQENFH 310


>06_02_0011 - 10569471-10572245
          Length = 924

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 103 CRKIKRSCWTWLLVF 59
           CR +K S +TW+LVF
Sbjct: 126 CRALKSSIYTWILVF 140


>05_04_0220 - 19167485-19169290
          Length = 601

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 42  QWIFWRNTSNHVQQLRFIFRHLCTITNAKQI 134
           +W+F+   SNHV  +R +   +  +TN   +
Sbjct: 362 KWLFFWGDSNHVDTIRNLLTFVLGVTNTSAV 392


>12_02_1279 + 27510605-27513301
          Length = 898

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 40  FSGYF-GGTQVTTSNSFVLFSDTCAPLPMLN 129
           FS Y  GG      ++  L +DTCAP P  N
Sbjct: 336 FSTYSTGGCAPADGSALPLLADTCAPPPNFN 366


>10_08_0056 + 14511651-14512775
          Length = 374

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 127 LALVMVHRCRKIKRSCWTWL 68
           LALV  H CR +K +C  +L
Sbjct: 317 LALVEQHHCRGLKEACLVFL 336


>03_02_0945 -
           12614658-12614909,12615200-12615325,12616684-12616872,
           12617059-12617169,12617629-12617744,12617861-12617966
          Length = 299

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 64  QVTTSNSFVLFSDTCAPLPMLN 129
           +V T +  +LFSD   PLP +N
Sbjct: 105 KVFTPDGAILFSDILTPLPRMN 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,510,030
Number of Sequences: 37544
Number of extensions: 92296
Number of successful extensions: 237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)