Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1386
         (212 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10081| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-38)                 31   0.19 
SB_3219| Best HMM Match : Ribosomal_L31 (HMM E-Value=1.7)              27   3.1  
SB_38880| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_11995| Best HMM Match : 7tm_1 (HMM E-Value=0)                       26   5.4  
SB_57980| Best HMM Match : Ribosomal_L20 (HMM E-Value=2.2)             25   7.1  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)           25   7.1  
SB_31215| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.6e-26)       25   7.1  
SB_8318| Best HMM Match : OTU (HMM E-Value=7.4e-19)                    25   7.1  
SB_50892| Best HMM Match : YHS (HMM E-Value=0.24)                      25   9.4  

>SB_10081| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-38)
          Length = 424

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 59  EHK*PRPTASFYFPTPVHHYQC*TDNKPPLLH 154
           EH  P P  +   P+P +HY   T N PP LH
Sbjct: 6   EHHSPLPPETANRPSPRNHYPPLTQNSPPPLH 37


>SB_3219| Best HMM Match : Ribosomal_L31 (HMM E-Value=1.7)
          Length = 528

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 77  PTASFYFPTPVHHYQC*TDNKP 142
           PT + Y+PT +  Y   TDN P
Sbjct: 259 PTETKYYPTEIKRYSTETDNYP 280


>SB_38880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 66  SNHVQQLRFIFRHLCTITNAKQIISHHYYTPKAD 167
           S H+  L F  ++L   T AK I    YY+PK +
Sbjct: 769 SIHIYDLPFCLKYLSKYTFAKYIPFLPYYSPKEE 802


>SB_11995| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 364

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 4   KLRKMVLFIYCDFSGYFGGTQVTTSNSFVLFSDTCAPLPML 126
           K+ +M+L +   F+  +    VT   SF+LF  TC+P P+L
Sbjct: 246 KVLRMLLIVLLLFALCWLPVHVT---SFILFFGTCSPPPIL 283


>SB_57980| Best HMM Match : Ribosomal_L20 (HMM E-Value=2.2)
          Length = 472

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
 Frame = +3

Query: 12  KNGALYLLRLQWIFWRNTSNHVQQLRFIFRH----LCTITNAKQIISHHY 149
           +NGA  +LR      R TSNH   +  + RH    L    N   +   HY
Sbjct: 35  RNGAQNVLRHTEYSLRGTSNHSNVILTVLRHTENFLRETNNHSNVTERHY 84


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
 Frame = +3

Query: 12   KNGALYLLRLQWIFWRNTSNHVQQLRFIFRH----LCTITNAKQIISHHY 149
            +NGA  +LR      R TSNH   +  + RH    L    N   +   HY
Sbjct: 5581 RNGAQNVLRHTEYSLRGTSNHSNVILTVLRHTENFLRETNNHSNVTERHY 5630


>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
          Length = 1592

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 10   RKMVLFIYCDFSGYFGG-TQVTTSNSF 87
            RK V+  YCDFS + GG T + TS S+
Sbjct: 1063 RKEVI-TYCDFSSHGGGWTLLLTSTSY 1088


>SB_31215| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.6e-26)
          Length = 448

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 8   SEKWCSLFIATSVDILE 58
           S+ WCS+F  + +D+LE
Sbjct: 268 SDSWCSVFRPSDLDVLE 284


>SB_8318| Best HMM Match : OTU (HMM E-Value=7.4e-19)
          Length = 728

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
 Frame = +3

Query: 12  KNGALYLLRLQWIFWRNTSNHVQQLRFIFRH----LCTITNAKQIISHHY 149
           +NGA  +LR      R TSNH   +  + RH    L    N   +   HY
Sbjct: 250 RNGAQNVLRHTEYSLRGTSNHSNVILTVLRHTENFLRETNNHSNVTERHY 299


>SB_50892| Best HMM Match : YHS (HMM E-Value=0.24)
          Length = 268

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 104 VSENKTKLLDVVTCVPPKYP 45
           VS   TK L  V CV PKYP
Sbjct: 192 VSTAITKALTEVGCVKPKYP 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,306,015
Number of Sequences: 59808
Number of extensions: 100958
Number of successful extensions: 226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 16,821,457
effective HSP length: 49
effective length of database: 13,890,865
effective search space used: 291708165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)