Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1386
         (212 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039049-6|AAB94249.2|  301|Caenorhabditis elegans Serpentine re...    27   1.8  
U80028-8|AAN73866.1|  378|Caenorhabditis elegans Serpentine rece...    25   7.3  
AC006673-2|AAF39928.1|  300|Caenorhabditis elegans Serpentine re...    25   7.3  
Z74033-1|CAA98475.2|  460|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U80030-3|AAG24160.2|  367|Caenorhabditis elegans Serpentine rece...    25   9.7  

>AF039049-6|AAB94249.2|  301|Caenorhabditis elegans Serpentine
           receptor, class x protein64 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 139 LIICLAL-VMVHRCRKIKRSCWTWLLVFLQNIH*SRN 32
           L++C  L VM+H    + R C  W     QNI   RN
Sbjct: 83  LLLCYELSVMIHLAISLNRFCAVWAPYKYQNIFSDRN 119


>U80028-8|AAN73866.1|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein118 protein.
          Length = 378

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 115 MVHRCRKIKRSCWTWLLVFL 56
           ++H  +   R C TWL+VF+
Sbjct: 116 LLHLLKDYSRRCSTWLMVFI 135


>AC006673-2|AAF39928.1|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein62 protein.
          Length = 300

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 139 LIICLAL-VMVHRCRKIKRSCWTWLLVFLQNIH*SRN 32
           L++C  L VM+H    + R C  W+     NI   +N
Sbjct: 87  LLLCYELSVMIHLAISLNRFCAVWIPYQYHNIFNEKN 123


>Z74033-1|CAA98475.2|  460|Caenorhabditis elegans Hypothetical
           protein F38B7.1a protein.
          Length = 460

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 63  TSNHVQQLRFIFRHLCTITNAKQIISH 143
           +SN++ Q   +F+ LC+  N   + SH
Sbjct: 41  SSNYIDQPGLLFKSLCSADNGVGVPSH 67


>U80030-3|AAG24160.2|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein115 protein.
          Length = 367

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 127 LALVMVHRCRKIKRSCWTWLLVFL 56
           L  V++   R   R C TWL+VF+
Sbjct: 113 LTKVLLDVVRDYSRRCSTWLIVFI 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,867,818
Number of Sequences: 27780
Number of extensions: 84261
Number of successful extensions: 219
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)