Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1386
         (212 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        19   5.1  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    19   5.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          19   6.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    19   6.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   8.9  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 35  ATSVDILEEHK*PRPTAS 88
           A +V+  ++H  P PT S
Sbjct: 50  AAAVNYAQQHNSPSPTGS 67


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -1

Query: 113 GAQVSENKTKLLDVV 69
           G++ +  KT+++DVV
Sbjct: 68  GSECTTRKTRIIDVV 82


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +3

Query: 114 ITNAKQIISHH 146
           +TN K ++ HH
Sbjct: 112 LTNRKSVVFHH 122


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 108 TGVGK*NEAVGRGYLC 61
           TG+G    A  RGY C
Sbjct: 109 TGIGLAMAAAVRGYKC 124


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -3

Query: 87  EAVGRGYLCSSKI 49
           +A G+G+ CS ++
Sbjct: 207 KACGKGFTCSKQL 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,977
Number of Sequences: 438
Number of extensions: 1109
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3165825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)