Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1386
         (212 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55325.1 68414.m06320 expressed protein                             27   1.7  
At4g30060.1 68417.m04276 expressed protein contains Pfam profile...    25   6.9  
At5g19060.1 68418.m02266 expressed protein ; expression supporte...    25   9.1  
At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containi...    25   9.1  

>At1g55325.1 68414.m06320 expressed protein
          Length = 1921

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 71   PRPTASFYFPTPVHHYQC*TDNKPPLLH 154
            P P   F  P+P+    C T   PPL H
Sbjct: 1755 PSPNMRFLHPSPLQLPTCLTAESPPLAH 1782


>At4g30060.1 68417.m04276 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 401

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 70  TTSNSFVLFSDTCAPL 117
           T++  FVL SD+C PL
Sbjct: 187 TSNQQFVLLSDSCVPL 202


>At5g19060.1 68418.m02266 expressed protein ; expression supported
           by MPSS
          Length = 551

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 33  LRLQWIFWRNTSNHVQQLR 89
           L+ +WIF+   SNHV  +R
Sbjct: 310 LKNKWIFFWGDSNHVDSIR 328


>At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 685

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +3

Query: 60  NTSNHVQQLRFIFRHLCTITNAKQI----ISHHYY 152
           + ++ VQQ++ +    CT+ + KQI    I+HH +
Sbjct: 8   SATSKVQQIKTLISVACTVNHLKQIHVSLINHHLH 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,492,304
Number of Sequences: 28952
Number of extensions: 75935
Number of successful extensions: 196
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 12,070,560
effective HSP length: 50
effective length of database: 10,622,960
effective search space used: 212459200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)