Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1385
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    95   7e-21
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    52   5e-08
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    48   1e-06
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    45   5e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    38   6e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    36   0.004
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    31   0.13 
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    26   2.7  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    25   6.3  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 94.7 bits (225), Expect = 7e-21
 Identities = 42/52 (80%), Positives = 42/52 (80%)
 Frame = +3

Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
           DSYV DEAQSK  ILTLKYP EH IV NWDDMEKIWHHTFYNELRV P   P
Sbjct: 51  DSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP 102



 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 30/36 (83%), Positives = 32/36 (88%)
 Frame = +1

Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
           PEEHP LLTEAPLNPK+N EKMTQI+FETFN PA Y
Sbjct: 98  PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFY 133



 Score = 58.0 bits (134), Expect = 7e-10
 Identities = 27/48 (56%), Positives = 31/48 (64%)
 Frame = +2

Query: 95  DEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
           +EE+AALV+DNGSGMCK              SIVGRPR  G+ VGMGQ
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQ 49


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 52.0 bits (119), Expect = 5e-08
 Identities = 19/50 (38%), Positives = 36/50 (72%)
 Frame = +3

Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRG 392
           D  V DEA++   +L +KYP E+ I+ ++++M ++W +TF+ +L++ PRG
Sbjct: 51  DVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRG 100



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +1

Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
           P    +LLTE P+NP AN EKM + MFE +    +Y
Sbjct: 98  PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVY 133



 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 101 EVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRP 205
           E A +V+DNG+G  K              SIVGRP
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 20/36 (55%), Positives = 24/36 (66%)
 Frame = +1

Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
           PE+H  LLTE PLNP  N E   +IMFE+FN   +Y
Sbjct: 121 PEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLY 156



 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 243 DSYV*DEAQSKXXI-LTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXP 386
           D ++ ++A  K     +L YP  H  + NWD ME+ W  + +  LR  P
Sbjct: 73  DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEP 121


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 45.2 bits (102), Expect = 5e-06
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = +1

Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAM 489
           PEEHP+LLTE PL    N EK+ +  +ET N PA+
Sbjct: 103 PEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPAL 137



 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYN-ELRVXPRGTP 398
           D +V  EAQ+   +L ++ P E  I+ NW DME+IW + + + +L   P   P
Sbjct: 55  DMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHP 107


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
           P EHP+L+TE   NP  N  K  + MFE+   PA Y
Sbjct: 96  PLEHPILITEPFDNPPENRVKTLETMFESLRCPATY 131


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 391 EHPVLLTEAPLNPKANXEKMTQIMFETFNTPAM 489
           EHP+ +TE   NP      MT+++FE +N P++
Sbjct: 115 EHPICMTEPLANPTYVRSTMTELLFELYNAPSV 147



 Score = 28.3 bits (60), Expect = 0.67
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 300 PXEHXIVTNWDDMEKIWHHTF 362
           P E  +++NWD ME++  +TF
Sbjct: 86  PFERNVISNWDLMEQVLDYTF 106


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
           P E+ +++TE   NP++  +++ +  FE  + PA Y
Sbjct: 99  PTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFY 134


>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 403 LLTEAPLNPKANXEKMTQIMFETFN 477
           +L  APL+ +   +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +3

Query: 297 YPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGT 395
           YP    ++ +W ++E +       E+R+ P+G+
Sbjct: 244 YPRTDGLLFSWSELESMNSENMKPEIRLIPKGS 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,723,622
Number of Sequences: 5004
Number of extensions: 28693
Number of successful extensions: 64
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)