Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1385
(495 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 9e-21
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 9e-21
SB_56| Best HMM Match : Actin (HMM E-Value=0) 97 9e-21
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 97 9e-21
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 9e-21
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 2e-12
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 1e-09
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 57 9e-09
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 42 4e-04
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 41 5e-04
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.30
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 28 4.9
SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21) 27 6.4
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 27 8.5
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 96.7 bits (230), Expect = 9e-21
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKIWHHTFYNELRV P P
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Score = 77.4 bits (182), Expect = 6e-15
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLTEAPLNPKAN EKMTQIMFETFN+PAMY
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMY 134
Score = 59.7 bits (138), Expect = 1e-09
Identities = 30/50 (60%), Positives = 32/50 (64%)
Frame = +2
Query: 89 MCDEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
M D+E+AALVVDNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 50
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 96.7 bits (230), Expect = 9e-21
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKIWHHTFYNELRV P P
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 102
Score = 77.4 bits (182), Expect = 6e-15
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLTEAPLNPKAN EKMTQIMFETFN+PAMY
Sbjct: 98 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMY 133
Score = 56.8 bits (131), Expect = 9e-09
Identities = 28/48 (58%), Positives = 31/48 (64%)
Frame = +2
Query: 95 DEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
+++VAALVVDNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 49
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 96.7 bits (230), Expect = 9e-21
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKIWHHTFYNELRV P P
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 102
Score = 77.4 bits (182), Expect = 6e-15
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLTEAPLNPKAN EKMTQIMFETFN+PAMY
Sbjct: 98 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMY 133
Score = 58.0 bits (134), Expect = 4e-09
Identities = 29/48 (60%), Positives = 31/48 (64%)
Frame = +2
Query: 95 DEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
++EVAALVVDNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 49
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 96.7 bits (230), Expect = 9e-21
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKIWHHTFYNELRV P P
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Score = 77.4 bits (182), Expect = 6e-15
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLTEAPLNPKAN EKMTQIMFETFN+PAMY
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMY 134
Score = 64.1 bits (149), Expect = 6e-11
Identities = 31/50 (62%), Positives = 33/50 (66%)
Frame = +2
Query: 89 MCDEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
MCD++VAALVVDNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 50
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 96.7 bits (230), Expect = 9e-21
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKIWHHTFYNELRV P P
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Score = 77.4 bits (182), Expect = 6e-15
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLTEAPLNPKAN EKMTQIMFETFN+PAMY
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMY 134
Score = 59.7 bits (138), Expect = 1e-09
Identities = 28/50 (56%), Positives = 32/50 (64%)
Frame = +2
Query: 89 MCDEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
M D+++AALV+DNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 50
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/40 (80%), Positives = 32/40 (80%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTF 362
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKI TF
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 58.0 bits (134), Expect = 4e-09
Identities = 28/48 (58%), Positives = 31/48 (64%)
Frame = +2
Query: 95 DEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
D++VAALV+DNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 49
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +1
Query: 436 NXEKMTQIMFETFNTPAMY 492
N + M +IMFETFN+PAMY
Sbjct: 78 NWDDMEKIMFETFNSPAMY 96
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +1
Query: 388 EEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
E+ PVLLTEAPLNPK N E+M Q+MFE+FN P MY
Sbjct: 2144 EDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMY 2178
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 113 LVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPR 208
+V+DNGSG CK +IVGRPR
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPR 2128
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 56.8 bits (131), Expect = 9e-09
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = +1
Query: 391 EHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
+HPVLLTEAPLNP+ N EK ++ FETFN PA++
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALF 159
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTF-YNELRVXPRGT 395
D V DEA +L + YP ++ IV NWDDM+ +W +TF +++ + PR T
Sbjct: 54 DLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNT 105
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
P VLLTE PLNP N EKM ++MFE + +Y
Sbjct: 102 PRNTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVY 137
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 41.5 bits (93), Expect = 4e-04
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +1
Query: 394 HPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
HP+L++EA N + EK+T++MFE +N PA +
Sbjct: 34 HPLLMSEAAWNTRIKREKLTELMFEKYNVPAFF 66
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 41.1 bits (92), Expect = 5e-04
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXP 386
D ++ DEA K T K+P H IV +WD ME+ W + LR P
Sbjct: 283 DFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEP 329
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -3
Query: 208 AGPSHDRGKXCARSIISCEAGLAHTGAIVYYQRGNFFV 95
A + D G+ + SI+S E GLAHTGAI+ Q + V
Sbjct: 2 ARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +2
Query: 83 FKMCDEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQN 241
FK+ A+V+DNG G+ K ++VG P+ + +G N
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVN 745
>SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)
Length = 609
Score = 27.5 bits (58), Expect = 6.4
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Frame = +1
Query: 196 GKAPPSXRDX-RYGTEPTLMFEMRHRAKXVS*PXNTPXNTESXLTGM---TWRRFGIIPS 363
G +PP+ D Y T T F+ + + P + NT S M TW R S
Sbjct: 508 GMSPPTTTDTDMYSTSDT-SFDTEDDSVGRAGPKSGTTNTTSMTINMAARTWSRRSHTSS 566
Query: 364 TMSCVSXPEEHPV 402
T S PE+ PV
Sbjct: 567 TAKRASAPEKTPV 579
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 234 DRTDSYV*DEAQSKXXILTLKY--PXEHXIVTNWDDMEKIWHHTFYNE 371
+R ++ D+ + L Y P + + NWD ++IW +TF E
Sbjct: 268 ERRKLFIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,902,237
Number of Sequences: 59808
Number of extensions: 249241
Number of successful extensions: 487
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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