Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1385
(495 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 97 8e-21
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 97 8e-21
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 97 8e-21
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 97 8e-21
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 97 8e-21
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 97 8e-21
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 97 8e-21
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 97 8e-21
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 97 8e-21
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 97 8e-21
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 96 1e-20
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 65 2e-11
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 65 2e-11
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 65 2e-11
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 64 5e-11
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 61 5e-10
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 50 1e-06
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 47 9e-06
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 45 3e-05
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 30 0.80
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 30 0.80
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 96.7 bits (230), Expect = 8e-21
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKIWHHTFYNELRV P P
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/36 (97%), Positives = 35/36 (97%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLTEAPLNPKAN EKMTQIMFETFNTPAMY
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 134
Score = 65.3 bits (152), Expect = 2e-11
Identities = 32/50 (64%), Positives = 33/50 (66%)
Frame = +2
Query: 89 MCDEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
MCD+EVAALVVDNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 50
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 96.7 bits (230), Expect = 8e-21
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKIWHHTFYNELRV P P
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/36 (97%), Positives = 35/36 (97%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLTEAPLNPKAN EKMTQIMFETFNTPAMY
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 134
Score = 64.1 bits (149), Expect = 5e-11
Identities = 31/50 (62%), Positives = 33/50 (66%)
Frame = +2
Query: 89 MCDEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
MCD++VAALVVDNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 50
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 96.7 bits (230), Expect = 8e-21
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKIWHHTFYNELRV P P
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/36 (97%), Positives = 35/36 (97%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLTEAPLNPKAN EKMTQIMFETFNTPAMY
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 134
Score = 65.3 bits (152), Expect = 2e-11
Identities = 32/50 (64%), Positives = 33/50 (66%)
Frame = +2
Query: 89 MCDEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
MCD+EVAALVVDNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 50
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 96.7 bits (230), Expect = 8e-21
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKIWHHTFYNELRV P P
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/36 (97%), Positives = 35/36 (97%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLTEAPLNPKAN EKMTQIMFETFNTPAMY
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 134
Score = 65.3 bits (152), Expect = 2e-11
Identities = 32/50 (64%), Positives = 33/50 (66%)
Frame = +2
Query: 89 MCDEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
MCD+EVAALVVDNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 50
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 96.7 bits (230), Expect = 8e-21
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKIWHHTFYNELRV P P
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/36 (97%), Positives = 35/36 (97%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLTEAPLNPKAN EKMTQIMFETFNTPAMY
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 134
Score = 65.3 bits (152), Expect = 2e-11
Identities = 32/50 (64%), Positives = 33/50 (66%)
Frame = +2
Query: 89 MCDEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
MCD+EVAALVVDNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 50
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 96.7 bits (230), Expect = 8e-21
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKIWHHTFYNELRV P P
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/36 (97%), Positives = 35/36 (97%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLTEAPLNPKAN EKMTQIMFETFNTPAMY
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 134
Score = 62.5 bits (145), Expect = 2e-10
Identities = 29/50 (58%), Positives = 33/50 (66%)
Frame = +2
Query: 89 MCDEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
MCD++VAAL++DNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 50
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 96.7 bits (230), Expect = 8e-21
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKIWHHTFYNELRV P P
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/36 (97%), Positives = 35/36 (97%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLTEAPLNPKAN EKMTQIMFETFNTPAMY
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 134
Score = 65.3 bits (152), Expect = 2e-11
Identities = 32/50 (64%), Positives = 33/50 (66%)
Frame = +2
Query: 89 MCDEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
MCD+EVAALVVDNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 50
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 96.7 bits (230), Expect = 8e-21
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKIWHHTFYNELRV P P
Sbjct: 8 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 59
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/36 (97%), Positives = 35/36 (97%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLTEAPLNPKAN EKMTQIMFETFNTPAMY
Sbjct: 55 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 90
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 96.7 bits (230), Expect = 8e-21
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKIWHHTFYNELRV P P
Sbjct: 38 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 89
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/36 (97%), Positives = 35/36 (97%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLTEAPLNPKAN EKMTQIMFETFNTPAMY
Sbjct: 85 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 120
Score = 31.5 bits (68), Expect = 0.35
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 188 SIVGRPRXXGVXVGMGQ 238
SIVGRPR GV VGMGQ
Sbjct: 20 SIVGRPRHQGVMVGMGQ 36
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 96.7 bits (230), Expect = 8e-21
Identities = 43/52 (82%), Positives = 43/52 (82%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKIWHHTFYNELRV P P
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/36 (97%), Positives = 35/36 (97%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLTEAPLNPKAN EKMTQIMFETFNTPAMY
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 134
Score = 65.3 bits (152), Expect = 2e-11
Identities = 32/50 (64%), Positives = 33/50 (66%)
Frame = +2
Query: 89 MCDEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
MCD+EVAALVVDNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 50
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 96.3 bits (229), Expect = 1e-20
Identities = 42/52 (80%), Positives = 43/52 (82%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXPRGTP 398
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKIWHHTFYNELR+ P P
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHP 102
Score = 77.8 bits (183), Expect = 4e-15
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLTEAPLNPK+N EKMTQIMFETFNTPAMY
Sbjct: 98 PEEHPVLLTEAPLNPKSNREKMTQIMFETFNTPAMY 133
Score = 58.8 bits (136), Expect = 2e-09
Identities = 29/48 (60%), Positives = 31/48 (64%)
Frame = +2
Query: 95 DEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
+EE+AALVVDNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 49
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 65.3 bits (152), Expect = 2e-11
Identities = 30/35 (85%), Positives = 30/35 (85%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKI 347
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKI
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
Score = 64.1 bits (149), Expect = 5e-11
Identities = 31/50 (62%), Positives = 33/50 (66%)
Frame = +2
Query: 89 MCDEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
MCD++VAALVVDNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 50
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 65.3 bits (152), Expect = 2e-11
Identities = 32/50 (64%), Positives = 33/50 (66%)
Frame = +2
Query: 89 MCDEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
MCD+EVAALVVDNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 50
Score = 65.3 bits (152), Expect = 2e-11
Identities = 30/35 (85%), Positives = 30/35 (85%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKI 347
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKI
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 65.3 bits (152), Expect = 2e-11
Identities = 32/50 (64%), Positives = 33/50 (66%)
Frame = +2
Query: 89 MCDEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
MCD+EVAALVVDNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 50
Score = 65.3 bits (152), Expect = 2e-11
Identities = 30/35 (85%), Positives = 30/35 (85%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKI 347
DSYV DEAQSK ILTLKYP EH IVTNWDDMEKI
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 64.1 bits (149), Expect = 5e-11
Identities = 31/50 (62%), Positives = 33/50 (66%)
Frame = +2
Query: 89 MCDEEVAALVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVGMGQ 238
MCD++VAALVVDNGSGMCK SIVGRPR GV VGMGQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 50
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/32 (84%), Positives = 27/32 (84%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDM 338
DSYV DEAQSK ILTLKYP EH IVTNWDDM
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 83
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 60.9 bits (141), Expect = 5e-10
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PEEHPVLLT+APLNP N E+ +I FETFN PA+Y
Sbjct: 102 PEEHPVLLTDAPLNPLKNRERSAEIFFETFNVPALY 137
Score = 53.2 bits (122), Expect = 1e-07
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTF-YNELRVXPRGTP 398
D ++ +A+S + +++YP EH IV NW DMEKIW + F ++L++ P P
Sbjct: 54 DIFIGPKAESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHP 106
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 113 LVVDNGSGMCKXXXXXXXXXXXXXXSIVGRPRXXGVXVG 229
+V+DNGSG+ K + VGRP+ V G
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAG 49
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 49.6 bits (113), Expect = 1e-06
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = +1
Query: 379 SXPEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
S P EHPVL +E+ N +A EK+T+IMFE F PA Y
Sbjct: 119 SNPSEHPVLFSESSWNDRARREKLTEIMFEKFQVPAYY 156
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 46.8 bits (106), Expect = 9e-06
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
PE+H LLTE PLN N E +IMFE+FN P +Y
Sbjct: 112 PEDHFFLLTEPPLNTPENREYTAEIMFESFNVPGLY 147
Score = 44.0 bits (99), Expect = 6e-05
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 234 DRTDSYV*DEAQSKXXI-LTLKYPXEHXIVTNWDDMEKIWHHTFYNELRVXP 386
D D ++ DEA S T+KYP H IV +WD ME+ W + LR P
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEP 112
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 44.8 bits (101), Expect = 3e-05
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 385 PEEHPVLLTEAPLNPKANXEKMTQIMFETFNTPAMY 492
P+E +LLTE PLNP +N EKM Q+MFE + ++Y
Sbjct: 102 PKECKLLLTEPPLNPNSNREKMFQVMFEQYGFNSIY 137
Score = 44.4 bits (100), Expect = 5e-05
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 243 DSYV*DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTFYNE-LRVXPR 389
D V +E +L + YP ++ IV NWDDM +W HTF E L + P+
Sbjct: 54 DLMVGEECSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPK 103
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 30.3 bits (65), Expect = 0.80
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 258 DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTF 362
+E K + ++ P E V NWD ++IW TF
Sbjct: 49 EECSDKFSLFYVR-PIERGYVVNWDTQQQIWEKTF 82
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 30.3 bits (65), Expect = 0.80
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 258 DEAQSKXXILTLKYPXEHXIVTNWDDMEKIWHHTF 362
+E K + ++ P E V NWD ++IW TF
Sbjct: 49 EECSDKFSLFYVR-PIERGYVVNWDTQQQIWEKTF 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,926,401
Number of Sequences: 27780
Number of extensions: 178154
Number of successful extensions: 402
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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