Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1384
         (729 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000038CE59 Cluster: COG0552: Signal recognition part...    33   7.2  
UniRef50_Q9DX73 Cluster: Long-distance movement protein; n=3; ss...    33   7.2  
UniRef50_A4C5F8 Cluster: Transcriptional regulator, AraC family ...    33   9.5  

>UniRef50_UPI000038CE59 Cluster: COG0552: Signal recognition
           particle GTPase; n=1; Nostoc punctiforme PCC 73102|Rep:
           COG0552: Signal recognition particle GTPase - Nostoc
           punctiforme PCC 73102
          Length = 1158

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -2

Query: 710 VRVASFFSHKLLIPQAPILGRRQ 642
           VR+AS F HKL IP AP+LG ++
Sbjct: 314 VRLASLFCHKLGIPAAPVLGSKR 336


>UniRef50_Q9DX73 Cluster: Long-distance movement protein; n=3; ssRNA
           positive-strand viruses, no DNA stage|Rep: Long-distance
           movement protein - Pea enation mosaic virus (PEMV)
          Length = 236

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 300 TRERAG-R*PAGLPRQDHFNTLHTSSSDTYSLHSGTQFRKHC*SAVY*SPGHKRSRR 467
           +RER G   P+  P+      L T +   +  H GT FR+   S+V+ S   +R+RR
Sbjct: 49  SRERKGYTHPSPTPKNSRQGQLRTEAVQEHPKHGGTAFRRESGSSVHPSRPRRRARR 105


>UniRef50_A4C5F8 Cluster: Transcriptional regulator, AraC family
           protein; n=1; Pseudoalteromonas tunicata D2|Rep:
           Transcriptional regulator, AraC family protein -
           Pseudoalteromonas tunicata D2
          Length = 338

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 21/59 (35%), Positives = 32/59 (54%)
 Frame = -3

Query: 334 RPAGYRPALSLVFTHPALDSVCRYQTPHRT*IS*VHFTIAVGRVYKSILCLSFVTNTCL 158
           R  GY PA+++ F +P  D + +YQT H   +    F   +  V KS+L + F+ NT L
Sbjct: 161 RQLGYTPAITIKFPYPEPDYLEQYQT-HLAVLCEFDFPFFMISVPKSLLTMPFI-NTSL 217


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 718,974,918
Number of Sequences: 1657284
Number of extensions: 14375003
Number of successful extensions: 32576
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32574
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)