Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1384
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    29   0.90 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    25   8.4  
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    25   8.4  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.4  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.4  
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    25   8.4  

>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 987

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 606  SYDTKQVEADNTAKVTLALSSELEMQRNIDVQPCLFYRTRWHTYD 472
            S++ +   AD  A V    SS  EMQ N D+Q  + +R R+   D
Sbjct: 927  SFNKRHRLADVVADVCRFQSSSYEMQSNTDLQSYILHRCRFVNQD 971


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +1

Query: 367  LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQAGL 513
            L+ LI  + I +HN  N    L  ++ + K H   ++G+    +++A +
Sbjct: 2380 LYSLIRLIFISQHNGKNPYYDLIVNISENKQHRADIVGLLLYILQEASI 2428


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 454 LCPGD*YTADQQCFLNCV 401
           L PGD  T DQ+  +NCV
Sbjct: 137 LLPGDLVTVDQKSVMNCV 154


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 533 CSVILTYSPACSIEHVGIPMTESS 462
           CS+    SP CS+   GI + ES+
Sbjct: 93  CSISNVQSPNCSVSEFGIAIEESN 116


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 528 AAFPALKKGQESPLQYYLPLPA 593
           A  P ++  Q  P QYY PLPA
Sbjct: 561 APSPHMQSQQALPYQYYNPLPA 582


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 340 VKITSTHSTLHHLIPTVCIQEHNLGNIVDQL 432
           +K+T+ H T   ++  V   EHNL   ++Q+
Sbjct: 134 LKVTNNHITHATIVGQVSGSEHNLSTAIEQV 164


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
 Frame = -1

Query: 702 CVVLFPQT--SYSSSSNPWTKTIRIAFWL*LQ*QSYDTKQVEADNTA-KVTLALSSELEM 532
           CV L PQ   +Y + S     T+ I  W+          QV+  N A KV   L   L  
Sbjct: 31  CVQLIPQIIKNYRAKSTEGLDTLFILSWVVASIPLSVYNQVQELNIALKVQPELFQALAF 90

Query: 531 QRNIDVQPCLFYRTRWHTYDRIFVI 457
                   CL+Y ++W     +FV+
Sbjct: 91  TTFFQ---CLYYGSKWPLRKALFVV 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,190
Number of Sequences: 5004
Number of extensions: 62812
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)