Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1384
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   5.1  
SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)               28   6.7  

>SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -1

Query: 267 VIKHLIAHKSRESILLSPWAVCINRSFVCPSLLIHAYIF----GLLFASVSILDMMHRLT 100
           + + L  +K+  ++++S W +CI   +VC   ++   +F    G L   + + DM ++ T
Sbjct: 59  IYRSLFTYKNSLTMIISIWIICI--FYVCIFAVLQGPVFYFHAGKLICHIRLHDMAYKNT 116

Query: 99  LNI 91
            NI
Sbjct: 117 WNI 119


>SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 230 DSRDLCAMRCLITTDTIKGRMRKHKRESRAIACGPATSR 346
           DSR     RC  +T  +KGR  K KR   A  C P + R
Sbjct: 410 DSRQSVIGRC--STSKVKGRFSKRKRRMCANRCFPPSKR 446


>SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)
          Length = 382

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 337 HVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDS--VIGMPTCSIE 501
           H+K    HSTL   +  VC     L ++ D  C +  D++ H +S   +   TC+++
Sbjct: 253 HIKFR--HSTLRPYVCDVCDYRLVLISLFDYSCKTCSDLRRHRESHNAVFSYTCAVQ 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,438,748
Number of Sequences: 59808
Number of extensions: 503095
Number of successful extensions: 1212
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)