Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1384
(729 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032623-15|CAJ76975.1| 260|Caenorhabditis elegans Hypothetical... 31 0.84
AL032623-2|CAD54165.1| 312|Caenorhabditis elegans Hypothetical ... 31 0.84
AL032623-1|CAA21508.2| 309|Caenorhabditis elegans Hypothetical ... 31 0.84
Z70312-6|CAA94387.1| 807|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z70309-14|CAA94363.1| 807|Caenorhabditis elegans Hypothetical p... 28 5.9
Z81130-12|CAB61027.1| 332|Caenorhabditis elegans Hypothetical p... 28 7.9
Z79695-8|CAB01967.2| 332|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AL032623-15|CAJ76975.1| 260|Caenorhabditis elegans Hypothetical
protein Y43F8B.1c protein.
Length = 260
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -1
Query: 591 QVEADNTAKVTLALSSELEMQRNIDVQPCLFYRTRWHTY--DRIFVIFYVLETSTQ 430
+++ K+++ SE E+QR I QP +++ +W+ + + + I V +T TQ
Sbjct: 37 EIQLPQVGKISIPELSEKEIQRTIVAQPASYHKVQWNEFPEEPKYEIGAVPKTKTQ 92
>AL032623-2|CAD54165.1| 312|Caenorhabditis elegans Hypothetical
protein Y43F8B.1b protein.
Length = 312
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -1
Query: 591 QVEADNTAKVTLALSSELEMQRNIDVQPCLFYRTRWHTY--DRIFVIFYVLETSTQ 430
+++ K+++ SE E+QR I QP +++ +W+ + + + I V +T TQ
Sbjct: 86 EIQLPQVGKISIPELSEKEIQRTIVAQPASYHKVQWNEFPEEPKYEIGAVPKTKTQ 141
>AL032623-1|CAA21508.2| 309|Caenorhabditis elegans Hypothetical
protein Y43F8B.1a protein.
Length = 309
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -1
Query: 591 QVEADNTAKVTLALSSELEMQRNIDVQPCLFYRTRWHTY--DRIFVIFYVLETSTQ 430
+++ K+++ SE E+QR I QP +++ +W+ + + + I V +T TQ
Sbjct: 86 EIQLPQVGKISIPELSEKEIQRTIVAQPASYHKVQWNEFPEEPKYEIGAVPKTKTQ 141
>Z70312-6|CAA94387.1| 807|Caenorhabditis elegans Hypothetical
protein ZC168.1 protein.
Length = 807
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 679 FLFLKLQSLDEDNSHCILAVTSVTVLRHQAGRGR 578
++ LK+Q +DED+ C+ A V++ AG R
Sbjct: 432 YVHLKIQDVDEDSKICLGACNVAHVVKENAGFSR 465
>Z70309-14|CAA94363.1| 807|Caenorhabditis elegans Hypothetical
protein ZC168.1 protein.
Length = 807
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 679 FLFLKLQSLDEDNSHCILAVTSVTVLRHQAGRGR 578
++ LK+Q +DED+ C+ A V++ AG R
Sbjct: 432 YVHLKIQDVDEDSKICLGACNVAHVVKENAGFSR 465
>Z81130-12|CAB61027.1| 332|Caenorhabditis elegans Hypothetical
protein F27D4.1 protein.
Length = 332
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Frame = +2
Query: 83 IAKILRVKRCIISRIETLANNRPKI*ACISNEGQTKDRFIHTAHGDSKMDSRDLCAMRCL 262
+AK+ VKR ++++ E L NN P+ A + Q + F G S + +
Sbjct: 68 VAKVNGVKRVLVAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSSAFGRGVIPRVAAK 127
Query: 263 ITTDTIKGRMRKHKRES--RAIACGPATSRSLQHTPHFII*YLQSAF 397
+ +I H +S R + G A + P ++ + ++F
Sbjct: 128 LDVSSISDVTEVHSADSFTRTLYAGNAVKKVKSTAPIKLLTFRGTSF 174
>Z79695-8|CAB01967.2| 332|Caenorhabditis elegans Hypothetical
protein F27D4.1 protein.
Length = 332
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Frame = +2
Query: 83 IAKILRVKRCIISRIETLANNRPKI*ACISNEGQTKDRFIHTAHGDSKMDSRDLCAMRCL 262
+AK+ VKR ++++ E L NN P+ A + Q + F G S + +
Sbjct: 68 VAKVNGVKRVLVAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSSAFGRGVIPRVAAK 127
Query: 263 ITTDTIKGRMRKHKRES--RAIACGPATSRSLQHTPHFII*YLQSAF 397
+ +I H +S R + G A + P ++ + ++F
Sbjct: 128 LDVSSISDVTEVHSADSFTRTLYAGNAVKKVKSTAPIKLLTFRGTSF 174
>Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical
protein B0464.2 protein.
Length = 1150
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 510 AVRQYYAAFPALKKGQESPLQYYLPLPAWCRKTVTEVTAKMQCELSSSKD 659
AV+ Y +A +K +S LQ+YL + + E ++C + D
Sbjct: 731 AVQMYSSAMKKFRKENDSTLQHYLAKAYYRANMLNEAKEALECAMLDQLD 780
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,073,629
Number of Sequences: 27780
Number of extensions: 365361
Number of successful extensions: 882
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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