Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1383
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    25   0.45 
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   4.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   4.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.7  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 411 LQVVSAELPHNYMYQCLFDRCLVTLYWSINSIKNI 307
           LQ  + E+ H   +Q    R L  +Y+S NS++N+
Sbjct: 73  LQDNTIEMIHRGTFQGDIHRDLTEVYFSFNSVRNV 107


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 265 LPTEGLVVVAPTTASPASRGGG*W 194
           L  +  VVV   + SP + GGG W
Sbjct: 14  LDDDDFVVVKTRSNSPEAGGGGFW 37


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 265 LPTEGLVVVAPTTASPASRGGG*W 194
           L  +  VVV   + SP + GGG W
Sbjct: 14  LDDDDFVVVKTRSNSPEAGGGGFW 37


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = -2

Query: 390 LPHNYMYQCLFDRCLVTLYWSI 325
           +PH+Y  +   ++  V L W +
Sbjct: 235 IPHDYRKRFRMEKIYVALVWGV 256


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,727
Number of Sequences: 336
Number of extensions: 3475
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)