Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1383
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    31   0.16 
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    26   6.0  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   7.9  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    25   7.9  

>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +1

Query: 82  PTKTSCLSTTDVQTSHETKLMKRQRGESEAFSAEHISPITLPLGTPDWRSSAPRPPALRS 261
           P   +  +T D++  H  K  KR+   S      ++ P++ P  +PD   S+P PP+ + 
Sbjct: 229 PLAQASRATPDIKEQHAKK-PKRKHTRSTV-PTSNVEPVSQPQPSPDKIVSSPNPPSAKR 286

Query: 262 AK 267
            K
Sbjct: 287 EK 288


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 396 PIRPEDVRETYKIERKKKTLYTLH 467
           P+RPE    TY + R  K ++ LH
Sbjct: 380 PLRPEFAESTYYLYRATKDVFYLH 403


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 245 HQPFGRQNKPINDNYGKNFYNIFLIEF 325
           + P G    P+N N   +F N+ LI+F
Sbjct: 465 YNPSGLAFNPVNPNANNSFVNLNLIQF 491


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 351 ICQINIGTYSYEAIQPIRPEDVRETYKIERKK 446
           IC + +G  S+E +  +   DV   Y +  KK
Sbjct: 185 ICDVEVGPSSFEKVFLLGKGDVGRVYLVREKK 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,702
Number of Sequences: 5004
Number of extensions: 56411
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)