Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1383
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0088 - 12224160-12224173,12224185-12224593,12224657-12226099 30 1.5
05_03_0179 - 9257066-9258946 29 2.7
11_04_0397 - 17230152-17231453 29 4.7
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 29 4.7
01_06_1213 - 35466954-35467592 29 4.7
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 28 6.2
07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792 28 8.2
07_01_0626 - 4681826-4682707 28 8.2
05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583 28 8.2
02_01_0371 + 2664488-2664862,2664973-2665059,2665155-2665267,266... 28 8.2
>08_02_0088 - 12224160-12224173,12224185-12224593,12224657-12226099
Length = 621
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = -3
Query: 224 QSGVP-RGRVMGEMCSALNASLSPLCLFMSFVSCEVWTSVVE---RQEVLVGSTPTCPA 60
++G P R R G+ CS N SL L + S WT E RQE G P PA
Sbjct: 154 EAGAPSRERPTGKWCSVHNTSLHDLADCRAVKSLAEWTRKWEEERRQERREGKAPAAPA 212
>05_03_0179 - 9257066-9258946
Length = 626
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = +1
Query: 73 GVEPTKTSCLSTTDVQTSHETKLMKRQRGESEAFSAEHISPITLPLGTPDWRSSAPRPPA 252
G PT T C +T V + TK ES + EH+ P T+ P S+A PP
Sbjct: 150 GAVPTPTKC--STPVPSCAITK----SDAESTPTTLEHVFPATMSQSMPSAASAAAAPPV 203
Query: 253 LRSA 264
+A
Sbjct: 204 SLTA 207
>11_04_0397 - 17230152-17231453
Length = 433
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 177 CGAHLSHHPPPRDAGLAVVGAT 242
C H +H P PR G A GAT
Sbjct: 51 CSLHWAHRPLPRGVGTAAFGAT 72
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 186 HLSHHPPPRDAGLAVVGATTTSP 254
H HHPPP L ++ A+TT+P
Sbjct: 235 HHHHHPPPPPPELQLLPASTTAP 257
>01_06_1213 - 35466954-35467592
Length = 212
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 229 SSAPRPPALRSAK*THKRQLWKEFL*YIFN 318
++AP+PPA S + KR+ W FL Y+ N
Sbjct: 20 AAAPQPPAQLSRYESQKRRDWNTFLQYLRN 49
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = -1
Query: 262 PTEGLVVVAPTTASPASRGGG 200
P E LVVVAPT A RG G
Sbjct: 26 PAENLVVVAPTVAGRRGRGRG 46
>07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792
Length = 622
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +1
Query: 28 RRTSALHWGWKAGHVGVEPTKTSCLSTTDVQTSHETKLMKRQRGESEAFSAEHISPI 198
R+ LH G + G + V P +SC + V+ + ESE+ A+ S +
Sbjct: 330 RKRCELHKGRRLGRITVNPKGSSCSYSCQVEIPVVESISPLTENESESDQAQQTSEL 386
>07_01_0626 - 4681826-4682707
Length = 293
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 73 GVEPTKTSCLSTTDVQTSHETKLMKRQRGESEAFSAEHISPITLPLGTPDWRSSAPRPPA 252
GV+ T T CL T + + R ES + EH+ P T+ TP ++A P+
Sbjct: 30 GVDMTPTKCL------TLGPSSITTRPAVESSLAAPEHVFPATMNSSTPSTTAAAIATPS 83
>05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583
Length = 602
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 288 MERISIIYF*LNLLTNIMSRGICQINIGTY 377
+ER + Y+ L LLT++ GIC IN Y
Sbjct: 135 LERPGLAYWHLFLLTSLAGNGICWINTVCY 164
>02_01_0371 +
2664488-2664862,2664973-2665059,2665155-2665267,
2665506-2665634,2666688-2666793,2667296-2667367,
2667702-2667806
Length = 328
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 142 MKRQRGE---SEAFSAEHISPITLPLGTPDWRSSAPRPPA 252
M+R RG+ S++ + E S IT G+P+W + RPP+
Sbjct: 193 MQRNRGQFTSSKSKAEEATSVITSSEGSPNWGAVEGRPPS 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,723,865
Number of Sequences: 37544
Number of extensions: 374755
Number of successful extensions: 1099
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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