Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1383
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z73103-2|CAA97425.2|  400|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical
           protein R05F9.12 protein.
          Length = 955

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +3

Query: 555 FSNIYVPISVIQSSTNPKAHRETL*IWFISGLIFSRDFLPVWVILPS 695
           FSN     SV++ STN K    +     I GLIFS  F+ +   LPS
Sbjct: 135 FSNGVFSFSVVRQSTNRKLFDTS-----IGGLIFSDQFIQIATYLPS 176


>Z73103-2|CAA97425.2|  400|Caenorhabditis elegans Hypothetical
           protein C08F8.3 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 79  EPTKTSCLSTTDVQTSHETKLMKRQRGESEAFSAE 183
           E TKTS ++ TDVQ     + +++ R ++E F  E
Sbjct: 207 ELTKTSSVAATDVQKKQMKEAIEQLRKDAEQFERE 241


>AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical
           protein C45G7.4 protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 384 HNYMYQCLFDRCLVTLYWSINSIK 313
           HN+   C+F  CL   Y+ ++SIK
Sbjct: 45  HNFCESCIFSLCLHQEYYLLDSIK 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,024,306
Number of Sequences: 27780
Number of extensions: 324390
Number of successful extensions: 885
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)