Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1383
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   0.52 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.6  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   2.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   3.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.5  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 239 HDHQPFGRQNKPINDNYGKNFYNIFLIEFI 328
           +++  +   N   N+NY K +YNI  IE I
Sbjct: 332 NNYNNYNNYNNNYNNNYKKLYYNINYIEQI 361


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 523 LTISQRVSYFYFQIFMCLFL*YKVQRTRKLTVKLYRSG 636
           L  S  +S FY  +F+ +F  YK+ R   +  K  + G
Sbjct: 207 LIFSSTIS-FYLPLFVMVFTYYKIYRAAVIQTKSLKLG 243


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 178 AEHISPITLPLGTPDWRSSAPRPP 249
           AE + P  LP G  +  SS P+PP
Sbjct: 39  AEEVDP--LPFGVENTISSVPQPP 60


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 278 NDNYGKNFYNIFLIEFI 328
           N+NY K +YNI  IE I
Sbjct: 320 NNNYKKLYYNINYIEQI 336


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 457 YKVFFFLSIL*VSLTSSGRI 398
           YK+FFFLS +  S T S  I
Sbjct: 618 YKMFFFLSSMDESNTKSYEI 637


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 457 YKVFFFLSIL*VSLTSSGRI 398
           YK+FFFLS +  S T S  I
Sbjct: 618 YKMFFFLSSMDESNTKSYEI 637


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 65  GMSESNRLKPPVSQQPTSKPRMR 133
           G S+ +   PP    P  K RMR
Sbjct: 375 GRSQKSTTGPPPGPTPAQKARMR 397


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 160 ESEAFSAEHISPITLPLGTPDWR 228
           +S  F  + I+   LPLG   WR
Sbjct: 174 DSAIFDGDFITENNLPLGLEVWR 196


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 618 ETL*IWFISGLI 653
           ETL +WF+S L+
Sbjct: 7   ETLRVWFLSALV 18


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 618 ETL*IWFISGLI 653
           ETL +WF+S L+
Sbjct: 7   ETLRVWFLSALV 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,496
Number of Sequences: 438
Number of extensions: 4226
Number of successful extensions: 31
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)