Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1382
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   8.9  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   8.9  
SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory s...    25   8.9  

>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 113 RLVL**FFIHLSTKISNRFSRD*AHRSSE 27
           RLV   F+ ++S KI NRFS    HRS +
Sbjct: 250 RLVYDDFYRNVSVKIMNRFSPASFHRSDK 278


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 153  ILHNETARQPTHCTSCSLVVLHPS 82
            +L N    +P  CT C L+V+H S
Sbjct: 1040 VLDNAIICEPLLCTLCHLLVIHDS 1063


>SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory
          subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 113

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 82 YQPRYLTDFQEIKHIEVPNRIL 17
          Y PRY  D  E +H+ +P  +L
Sbjct: 27 YSPRYADDEYEYRHVMLPKAML 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,188
Number of Sequences: 5004
Number of extensions: 64317
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)