Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1382
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0187 - 16166365-16166571,16166665-16166962,16167197-161675...    28   9.3  

>02_03_0187 -
           16166365-16166571,16166665-16166962,16167197-16167524,
           16167990-16168157,16168803-16168858,16168991-16169076,
           16169846-16169977
          Length = 424

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 564 LWSLNHWGLVS*TLPSVAICLY 629
           LWS +HW L+   +   AIC+Y
Sbjct: 254 LWSFHHWILLVINIDDSAICIY 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,901,864
Number of Sequences: 37544
Number of extensions: 393279
Number of successful extensions: 684
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)