Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1380
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    26   5.4  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   7.2  
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    25   9.5  

>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = -2

Query: 571 IIICTCDVNKAVTGNNIF 518
           +++ +CD++ A+ GNNI+
Sbjct: 64  VLVTSCDLHAAILGNNIY 81


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 458 ASYRFIANLRL*PGLVTVILRLVSNNFIILLTI 360
           A+YR + NLR  PG+  +    + + F+ILL +
Sbjct: 297 ANYRLLHNLRAFPGISAISSSYLVHIFMILLGV 329


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 552 SHVHIIILLFFSFTSMDDRPLDVKWLPESIDVNDVNAAI 668
           S+VHII L   S  S  D  + V+ + + IDV  VN+ I
Sbjct: 55  SNVHIIKLDVTSLRSAKDAAMQVEKVVKCIDVLWVNSGI 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,758
Number of Sequences: 5004
Number of extensions: 60884
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)