Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1380
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical pr...    32   0.55 
AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal t...    32   0.55 
AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal t...    32   0.55 
AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein ...    32   0.55 
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z68217-3|CAA92466.2|  466|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical
           protein W09D6.6 protein.
          Length = 801

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
 Frame = +1

Query: 31  TRWTLRSFTKL*KHRSDIR--VFELALVDEQFTILSITRSSNFS-CVYRANAL----KVS 189
           T W  + F    K+R D+   + ELALV   F    +T   NFS C  R +A     K  
Sbjct: 150 TDWK-KYFEPTSKNRGDLTFYIIELALVTVVFFFTIVTGLFNFSGCSSRESAWNNLSKKV 208

Query: 190 *CYYCYVWQTINIKINFRILICL 258
                Y+W T +I +  R++ CL
Sbjct: 209 VTVAPYIWPTKSISLQLRVVFCL 231


>AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
 Frame = +1

Query: 31  TRWTLRSFTKL*KHRSDIR--VFELALVDEQFTILSITRSSNFS-CVYRANAL----KVS 189
           T W  + F    K+R D+   + ELALV   F    +T   NFS C  R +A     K  
Sbjct: 150 TDWK-KYFEPTSKNRGDLTFYIIELALVTVVFFFTIVTGLFNFSGCSSRESAWNNLSKKV 208

Query: 190 *CYYCYVWQTINIKINFRILICL 258
                Y+W T +I +  R++ CL
Sbjct: 209 VTVAPYIWPTKSISLQLRVVFCL 231


>AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
 Frame = +1

Query: 31  TRWTLRSFTKL*KHRSDIR--VFELALVDEQFTILSITRSSNFS-CVYRANAL----KVS 189
           T W  + F    K+R D+   + ELALV   F    +T   NFS C  R +A     K  
Sbjct: 150 TDWK-KYFEPTSKNRGDLTFYIIELALVTVVFFFTIVTGLFNFSGCSSRESAWNNLSKKV 208

Query: 190 *CYYCYVWQTINIKINFRILICL 258
                Y+W T +I +  R++ CL
Sbjct: 209 VTVAPYIWPTKSISLQLRVVFCL 231


>AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein
           protein.
          Length = 801

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
 Frame = +1

Query: 31  TRWTLRSFTKL*KHRSDIR--VFELALVDEQFTILSITRSSNFS-CVYRANAL----KVS 189
           T W  + F    K+R D+   + ELALV   F    +T   NFS C  R +A     K  
Sbjct: 150 TDWK-KYFEPTSKNRGDLTFYIIELALVTVVFFFTIVTGLFNFSGCSSRESAWNNLSKKV 208

Query: 190 *CYYCYVWQTINIKINFRILICL 258
                Y+W T +I +  R++ CL
Sbjct: 209 VTVAPYIWPTKSISLQLRVVFCL 231


>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
            protein Y38C9A.1 protein.
          Length = 1484

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 364  RYDITMLWNTHSSCHKPLVKLIELDRIPHLTRVCIVN--KSVSE 239
            R D+  LW T S C KP   LI   +I     VCIV+  KS+ E
Sbjct: 940  RSDLWRLWQTLSKCSKPDEPLIR--QIKTKAEVCIVHCFKSIDE 981


>Z68217-3|CAA92466.2|  466|Caenorhabditis elegans Hypothetical
           protein F58G6.4 protein.
          Length = 466

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 594 SMDDRPLDVKWLPESIDVNDVNAAIH 671
           S DD+ L   WLP +  +N  +AAIH
Sbjct: 104 SFDDKVLQRLWLPNTCFINSKSAAIH 129


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
            F37A4.4 protein.
          Length = 1163

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 114  TVYNSIDYKKLKFQLCL*SECPKSIIMLLLLRMADDQY*NKFS 242
            ++YN   Y+K KF+LC+  + P S   + +    DD   N+F+
Sbjct: 917  SIYNK--YRKKKFKLCVPEKFPVSSFHIYIEDRTDDNVTNEFT 957


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,903,179
Number of Sequences: 27780
Number of extensions: 335459
Number of successful extensions: 616
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)